Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.64■□□□□ 0.25
VCPP55072 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCPP55072 CYP4F24P-201ENST00000586049 1580 ntBASIC16.64■□□□□ 0.25
VCPP55072 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VCPP55072 KRT8P12-202ENST00000472924 1397 ntBASIC16.64■□□□□ 0.25
VCPP55072 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.63■□□□□ 0.25
VCPP55072 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 PFN1P12-201ENST00000455938 534 ntBASIC16.63■□□□□ 0.25
VCPP55072 SDHAP3-202ENST00000515467 728 ntBASIC16.63■□□□□ 0.25
VCPP55072 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 SLC25A47P1-201ENST00000531577 414 ntBASIC16.63■□□□□ 0.25
VCPP55072 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.63■□□□□ 0.25
VCPP55072 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.63■□□□□ 0.25
VCPP55072 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.63■□□□□ 0.25
VCPP55072 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.63■□□□□ 0.25
VCPP55072 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
VCPP55072 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.63■□□□□ 0.25
VCPP55072 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.63■□□□□ 0.25
VCPP55072 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VCPP55072 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCPP55072 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.62■□□□□ 0.25
VCPP55072 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.62■□□□□ 0.25
VCPP55072 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 TMBIM7P-203ENST00000641617 1718 ntBASIC16.62■□□□□ 0.25
VCPP55072 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 CLK3P2-201ENST00000427566 1453 ntBASIC16.62■□□□□ 0.25
VCPP55072 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.62■□□□□ 0.25
VCPP55072 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.62■□□□□ 0.25
VCPP55072 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 FAM21FP-201ENST00000426241 1131 ntBASIC16.62■□□□□ 0.25
VCPP55072 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.62■□□□□ 0.25
VCPP55072 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.62■□□□□ 0.25
VCPP55072 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.62■□□□□ 0.25
VCPP55072 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VCPP55072 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VCPP55072 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.62■□□□□ 0.25
VCPP55072 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCPP55072 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 MIR663B-201ENST00000408361 115 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms