Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 AC084364.1-201ENST00000551967 1556 ntBASIC15.11■□□□□ 0.01
HNF4AP41235 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HNF4AP41235 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HNF4AP41235 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HNF4AP41235 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HNF4AP41235 MIR770-201ENST00000390219 98 ntBASIC15.1■□□□□ 0.01
HNF4AP41235 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.1■□□□□ 0.01
HNF4AP41235 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.1■□□□□ 0.01
HNF4AP41235 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.1■□□□□ 0.01
HNF4AP41235 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.1■□□□□ 0.01
HNF4AP41235 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 AL844908.2-201ENST00000609461 460 ntBASIC15.1■□□□□ 0.01
HNF4AP41235 AC074044.1-201ENST00000609673 707 ntBASIC15.1■□□□□ 0.01
HNF4AP41235 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HNF4AP41235 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.1■□□□□ 0.01
HNF4AP41235 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.1■□□□□ 0.01
HNF4AP41235 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
HNF4AP41235 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.09■□□□□ 0.01
HNF4AP41235 TSSK5P-201ENST00000423978 907 ntBASIC15.09■□□□□ 0.01
HNF4AP41235 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.09■□□□□ 0.01
HNF4AP41235 SDHAP3-202ENST00000515467 728 ntBASIC15.09■□□□□ 0.01
HNF4AP41235 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.09■□□□□ 0.01
HNF4AP41235 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.09■□□□□ 0.01
HNF4AP41235 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.09■□□□□ 0.01
HNF4AP41235 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HNF4AP41235 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.09■□□□□ 0.01
HNF4AP41235 AC148477.4-201ENST00000613430 1793 ntBASIC15.08■□□□□ 0.01
HNF4AP41235 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.08■□□□□ 0.01
HNF4AP41235 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
HNF4AP41235 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.08■□□□□ 0.01
HNF4AP41235 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
HNF4AP41235 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.08■□□□□ 0.01
HNF4AP41235 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.08■□□□□ 0.01
HNF4AP41235 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HNF4AP41235 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HNF4AP41235 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0.01
HNF4AP41235 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.08■□□□□ 0.01
HNF4AP41235 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HNF4AP41235 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms