Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC005252.3-201ENST00000623855 2258 ntBASIC14.12□□□□□ -0.15
HOXD4P09016 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXD4P09016 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXD4P09016 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 AC234783.1-201ENST00000441761 496 ntBASIC14.12□□□□□ -0.15
HOXD4P09016 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXD4P09016 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXD4P09016 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.12□□□□□ -0.15
HOXD4P09016 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.12□□□□□ -0.15
HOXD4P09016 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
HOXD4P09016 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.12□□□□□ -0.15
HOXD4P09016 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.12□□□□□ -0.15
HOXD4P09016 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 AL158212.4-201ENST00000624062 1286 ntBASIC14.12□□□□□ -0.15
HOXD4P09016 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXD4P09016 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXD4P09016 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD4P09016 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD4P09016 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.11□□□□□ -0.15
HOXD4P09016 FAM86LP-201ENST00000478302 853 ntBASIC14.11□□□□□ -0.15
HOXD4P09016 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 BRI3BPP1-201ENST00000594224 787 ntBASIC14.11□□□□□ -0.15
HOXD4P09016 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
HOXD4P09016 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD4P09016 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD4P09016 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD4P09016 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms