Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 AC012615.1-201ENST00000565797 1299 ntBASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 AP005901.3-202ENST00000581653 237 ntBASIC11.74□□□□□ -0.53
HLA-DQA1P01909 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ACE3P-201ENST00000423435 1973 ntBASIC11.74□□□□□ -0.53
HLA-DQA1P01909 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 ATP5G2P1-201ENST00000433580 426 ntBASIC11.73□□□□□ -0.53
HLA-DQA1P01909 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 CR383656.2-201ENST00000548656 2254 ntBASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 PRELID1P1-202ENST00000567272 903 ntBASIC11.73□□□□□ -0.53
HLA-DQA1P01909 AC005412.3-201ENST00000580309 715 ntBASIC11.73□□□□□ -0.53
HLA-DQA1P01909 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 NPAP1P7-201ENST00000613027 823 ntBASIC11.73□□□□□ -0.53
HLA-DQA1P01909 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DQA1P01909 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms