Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC079781.5-202ENST00000641784 3743 ntBASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 CICP14-201ENST00000629111 2732 ntBASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC104989.1-201ENST00000519711 778 ntBASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC008735.3-201ENST00000596646 500 ntBASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC010319.3-201ENST00000597028 470 ntBASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TMX2-CTNND1H3BSU7 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 EEF1DP4-201ENST00000446006 880 ntBASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ENPP7P5-201ENST00000541031 1031 ntBASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms