Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 LINC01165-201ENST00000445190 1623 ntBASIC11.74□□□□□ -0.53
COL6A5A8TX70 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 RN7SL173P-201ENST00000461853 292 ntBASIC11.74□□□□□ -0.53
COL6A5A8TX70 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 HNRNPA1P36-201ENST00000521313 955 ntBASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 E2F3P2-201ENST00000447755 1422 ntBASIC11.74□□□□□ -0.53
COL6A5A8TX70 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ABR-203ENST00000536794 2213 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC022616.1-201ENST00000518688 554 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PHB-210ENST00000511832 1509 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 GNE-204ENST00000539208 2190 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PGAM1P12-201ENST00000505622 748 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC092612.1-201ENST00000514501 998 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms