Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 POM121L4P-202ENST00000427789 1891 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
HOXA1P49639 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXA1P49639 FAM197Y8-203ENST00000450145 560 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 KRT18P34-201ENST00000488218 1270 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXA1P49639 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXA1P49639 OR7E47P-204ENST00000575924 449 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXA1P49639 AL365330.1-201ENST00000607459 531 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 AC087481.3-201ENST00000602886 1894 ntBASIC12.99□□□□□ -0.33
HOXA1P49639 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXA1P49639 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXA1P49639 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HOXA1P49639 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.98□□□□□ -0.33
HOXA1P49639 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 AC020658.6-201ENST00000623564 1870 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 AC093724.1-201ENST00000448659 1027 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 AC245100.5-201ENST00000452108 331 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 AC108751.1-201ENST00000490852 363 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.98□□□□□ -0.33
HOXA1P49639 AC012313.10-201ENST00000623509 926 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms