Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.67□□□□□ -0.06
RFX3P48380 SERBP1P3-201ENST00000459980 809 ntBASIC14.67□□□□□ -0.06
RFX3P48380 AC092183.1-201ENST00000469884 875 ntBASIC14.67□□□□□ -0.06
RFX3P48380 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.67□□□□□ -0.06
RFX3P48380 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 AL390754.1-201ENST00000619088 582 ntBASIC14.67□□□□□ -0.06
RFX3P48380 MIR6069-201ENST00000620069 79 ntBASIC14.67□□□□□ -0.06
RFX3P48380 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 AC013268.4-201ENST00000637413 2228 ntBASIC14.67□□□□□ -0.06
RFX3P48380 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.67□□□□□ -0.06
RFX3P48380 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.66□□□□□ -0.06
RFX3P48380 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 AL607033.1-201ENST00000623900 1599 ntBASIC14.66□□□□□ -0.06
RFX3P48380 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
RFX3P48380 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 AL645939.2-201ENST00000427340 991 ntBASIC14.66□□□□□ -0.06
RFX3P48380 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 RN7SL618P-201ENST00000477850 296 ntBASIC14.66□□□□□ -0.06
RFX3P48380 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.66□□□□□ -0.06
RFX3P48380 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.66□□□□□ -0.06
RFX3P48380 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 AC051619.7-201ENST00000568314 623 ntBASIC14.66□□□□□ -0.06
RFX3P48380 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
RFX3P48380 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.66□□□□□ -0.06
RFX3P48380 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RFX3P48380 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
RFX3P48380 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.65□□□□□ -0.06
RFX3P48380 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms