Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 AL121723.1-201ENST00000445194 1519 ntBASIC13.54□□□□□ -0.24
COL8A1P27658 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.54□□□□□ -0.24
COL8A1P27658 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC13.54□□□□□ -0.24
COL8A1P27658 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
COL8A1P27658 PGAM1P5-201ENST00000548011 764 ntBASIC13.54□□□□□ -0.24
COL8A1P27658 AC005730.2-201ENST00000564549 1184 ntBASIC13.54□□□□□ -0.24
COL8A1P27658 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.54□□□□□ -0.24
COL8A1P27658 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.54□□□□□ -0.24
COL8A1P27658 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.54□□□□□ -0.24
COL8A1P27658 WDR7-208ENST00000589935 544 ntTSL 4 BASIC13.54□□□□□ -0.24
COL8A1P27658 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 AC005786.4-201ENST00000623369 682 ntBASIC13.54□□□□□ -0.24
COL8A1P27658 AP003400.6-201ENST00000624698 740 ntBASIC13.54□□□□□ -0.24
COL8A1P27658 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.54□□□□□ -0.24
COL8A1P27658 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.54□□□□□ -0.24
COL8A1P27658 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
COL8A1P27658 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL8A1P27658 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.54□□□□□ -0.24
COL8A1P27658 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.53□□□□□ -0.24
COL8A1P27658 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
COL8A1P27658 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.53□□□□□ -0.24
COL8A1P27658 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL8A1P27658 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.53□□□□□ -0.24
COL8A1P27658 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL8A1P27658 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.53□□□□□ -0.24
COL8A1P27658 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.53□□□□□ -0.24
COL8A1P27658 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.53□□□□□ -0.24
COL8A1P27658 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.53□□□□□ -0.24
COL8A1P27658 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AC008894.3-201ENST00000624324 3103 ntBASIC13.53□□□□□ -0.24
COL8A1P27658 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
COL8A1P27658 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms