Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.11■□□□□ 0.01
LDLRP01130 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LDLRP01130 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 LINC01225-203ENST00000563550 1244 ntBASIC15.11■□□□□ 0.01
LDLRP01130 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
LDLRP01130 AC009118.2-201ENST00000613275 655 ntBASIC15.11■□□□□ 0.01
LDLRP01130 AL161645.1-201ENST00000622716 1255 ntBASIC15.11■□□□□ 0.01
LDLRP01130 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 AC013726.1-201ENST00000563747 2285 ntBASIC15.11■□□□□ 0.01
LDLRP01130 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LDLRP01130 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.11■□□□□ 0.01
LDLRP01130 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 AL359258.3-201ENST00000622910 2331 ntBASIC15.1■□□□□ 0.01
LDLRP01130 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 LINC00528-201ENST00000600723 2160 ntBASIC15.1■□□□□ 0.01
LDLRP01130 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 ARSEP1-201ENST00000420443 635 ntBASIC15.1■□□□□ 0.01
LDLRP01130 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.1■□□□□ 0.01
LDLRP01130 AC092580.3-201ENST00000430932 139 ntBASIC15.1■□□□□ 0.01
LDLRP01130 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.1■□□□□ 0.01
LDLRP01130 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.1■□□□□ 0.01
LDLRP01130 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LDLRP01130 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 AC084121.4-201ENST00000641598 221 ntBASIC15.1■□□□□ 0.01
LDLRP01130 AF228730.8-201ENST00000642140 221 ntBASIC15.1■□□□□ 0.01
LDLRP01130 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 UXT-AS1-201ENST00000590504 1525 ntBASIC15.1■□□□□ 0.01
LDLRP01130 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.1■□□□□ 0.01
LDLRP01130 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 AC092127.1-201ENST00000567093 3455 ntBASIC15.1■□□□□ 0.01
LDLRP01130 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
LDLRP01130 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.1■□□□□ 0.01
LDLRP01130 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDLRP01130 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 GRK6P1-201ENST00000400595 1711 ntBASIC15.09■□□□□ 0.01
LDLRP01130 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LDLRP01130 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms