Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 HLA-L-211ENST00000482052 1765 ntBASIC18.73■□□□□ 0.59
FOXA2Q9Y261 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA2Q9Y261 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 RPS2P7-201ENST00000447334 885 ntBASIC18.72■□□□□ 0.59
FOXA2Q9Y261 AC139795.1-202ENST00000500444 432 ntBASIC18.72■□□□□ 0.59
FOXA2Q9Y261 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
FOXA2Q9Y261 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA2Q9Y261 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.71■□□□□ 0.58
FOXA2Q9Y261 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 AL033527.3-201ENST00000566366 1196 ntBASIC18.7■□□□□ 0.58
FOXA2Q9Y261 AC087393.1-201ENST00000582896 145 ntBASIC18.7■□□□□ 0.58
FOXA2Q9Y261 BHLHE23-202ENST00000612929 1109 ntBASIC18.7■□□□□ 0.58
FOXA2Q9Y261 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA2Q9Y261 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA2Q9Y261 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA2Q9Y261 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA2Q9Y261 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXA2Q9Y261 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA2Q9Y261 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXA2Q9Y261 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA2Q9Y261 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 ABCB10P4-201ENST00000566803 2184 ntBASIC18.66■□□□□ 0.58
FOXA2Q9Y261 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
FOXA2Q9Y261 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms