Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 LINC01971-201ENST00000617888 1048 ntBASIC21.52■■□□□ 1.04
USE1Q9NZ43 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.52■■□□□ 1.03
USE1Q9NZ43 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
USE1Q9NZ43 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USE1Q9NZ43 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USE1Q9NZ43 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
USE1Q9NZ43 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USE1Q9NZ43 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.51■■□□□ 1.03
USE1Q9NZ43 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
USE1Q9NZ43 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USE1Q9NZ43 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USE1Q9NZ43 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
USE1Q9NZ43 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USE1Q9NZ43 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.5■■□□□ 1.03
USE1Q9NZ43 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.5■■□□□ 1.03
USE1Q9NZ43 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USE1Q9NZ43 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
USE1Q9NZ43 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.49■■□□□ 1.03
USE1Q9NZ43 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.49■■□□□ 1.03
USE1Q9NZ43 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
USE1Q9NZ43 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
USE1Q9NZ43 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USE1Q9NZ43 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.48■■□□□ 1.03
USE1Q9NZ43 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USE1Q9NZ43 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USE1Q9NZ43 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
USE1Q9NZ43 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USE1Q9NZ43 HLA-V-202ENST00000446817 847 ntBASIC21.48■■□□□ 1.03
USE1Q9NZ43 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
USE1Q9NZ43 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USE1Q9NZ43 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USE1Q9NZ43 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.47■■□□□ 1.03
USE1Q9NZ43 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
USE1Q9NZ43 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
USE1Q9NZ43 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USE1Q9NZ43 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.46■■□□□ 1.03
USE1Q9NZ43 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.46■■□□□ 1.03
USE1Q9NZ43 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
USE1Q9NZ43 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
USE1Q9NZ43 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
USE1Q9NZ43 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
USE1Q9NZ43 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USE1Q9NZ43 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
USE1Q9NZ43 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.45■■□□□ 1.02
USE1Q9NZ43 AC233723.2-201ENST00000623798 2106 ntBASIC21.45■■□□□ 1.02
USE1Q9NZ43 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.45■■□□□ 1.02
USE1Q9NZ43 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.45■■□□□ 1.02
USE1Q9NZ43 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.44■■□□□ 1.02
USE1Q9NZ43 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.44■■□□□ 1.02
USE1Q9NZ43 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.44■■□□□ 1.02
USE1Q9NZ43 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USE1Q9NZ43 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USE1Q9NZ43 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.44■■□□□ 1.02
USE1Q9NZ43 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USE1Q9NZ43 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USE1Q9NZ43 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.44■■□□□ 1.02
USE1Q9NZ43 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
USE1Q9NZ43 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.43■■□□□ 1.02
USE1Q9NZ43 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USE1Q9NZ43 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
USE1Q9NZ43 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USE1Q9NZ43 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USE1Q9NZ43 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.43■■□□□ 1.02
USE1Q9NZ43 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USE1Q9NZ43 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USE1Q9NZ43 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USE1Q9NZ43 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USE1Q9NZ43 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
USE1Q9NZ43 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USE1Q9NZ43 AC126177.7-201ENST00000547904 679 ntBASIC21.42■■□□□ 1.02
USE1Q9NZ43 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
USE1Q9NZ43 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
USE1Q9NZ43 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
USE1Q9NZ43 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
USE1Q9NZ43 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
USE1Q9NZ43 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms