Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.16■□□□□ 0.98
NPAS1Q99742 THA1P-201ENST00000590384 1145 ntBASIC21.16■□□□□ 0.98
NPAS1Q99742 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 AL031848.2-201ENST00000607670 837 ntBASIC21.16■□□□□ 0.98
NPAS1Q99742 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
NPAS1Q99742 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS1Q99742 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS1Q99742 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS1Q99742 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.15■□□□□ 0.98
NPAS1Q99742 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS1Q99742 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.15■□□□□ 0.98
NPAS1Q99742 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS1Q99742 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS1Q99742 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.15■□□□□ 0.98
NPAS1Q99742 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS1Q99742 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS1Q99742 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS1Q99742 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPAS1Q99742 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPAS1Q99742 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.14■□□□□ 0.97
NPAS1Q99742 MIR4281-201ENST00000580852 62 ntBASIC21.14■□□□□ 0.97
NPAS1Q99742 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
NPAS1Q99742 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.14■□□□□ 0.97
NPAS1Q99742 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.13■□□□□ 0.97
NPAS1Q99742 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NPAS1Q99742 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS1Q99742 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS1Q99742 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
NPAS1Q99742 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPAS1Q99742 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPAS1Q99742 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.12■□□□□ 0.97
NPAS1Q99742 AC011551.1-201ENST00000614101 683 ntBASIC21.12■□□□□ 0.97
NPAS1Q99742 HLA-L-211ENST00000482052 1765 ntBASIC21.12■□□□□ 0.97
NPAS1Q99742 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.12■□□□□ 0.97
NPAS1Q99742 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.12■□□□□ 0.97
NPAS1Q99742 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.11■□□□□ 0.97
NPAS1Q99742 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.11■□□□□ 0.97
NPAS1Q99742 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPAS1Q99742 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPAS1Q99742 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NPAS1Q99742 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.11■□□□□ 0.97
NPAS1Q99742 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPAS1Q99742 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.11■□□□□ 0.97
NPAS1Q99742 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPAS1Q99742 AP003733.4-201ENST00000623785 1697 ntBASIC21.11■□□□□ 0.97
NPAS1Q99742 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPAS1Q99742 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPAS1Q99742 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
NPAS1Q99742 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 AL139125.2-201ENST00000623134 1869 ntBASIC21.09■□□□□ 0.97
NPAS1Q99742 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
NPAS1Q99742 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.09■□□□□ 0.97
NPAS1Q99742 AC009299.2-201ENST00000482477 511 ntBASIC21.09■□□□□ 0.97
NPAS1Q99742 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.09■□□□□ 0.97
NPAS1Q99742 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.09■□□□□ 0.97
NPAS1Q99742 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.09■□□□□ 0.97
NPAS1Q99742 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPAS1Q99742 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.09■□□□□ 0.97
NPAS1Q99742 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPAS1Q99742 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
NPAS1Q99742 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPAS1Q99742 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
NPAS1Q99742 AF131216.4-201ENST00000638924 1588 ntBASIC21.08■□□□□ 0.97
NPAS1Q99742 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPAS1Q99742 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPAS1Q99742 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NPAS1Q99742 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.07■□□□□ 0.96
NPAS1Q99742 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPAS1Q99742 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
NPAS1Q99742 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPAS1Q99742 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPAS1Q99742 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NPAS1Q99742 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.06■□□□□ 0.96
NPAS1Q99742 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.06■□□□□ 0.96
NPAS1Q99742 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.06■□□□□ 0.96
NPAS1Q99742 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPAS1Q99742 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPAS1Q99742 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.06■□□□□ 0.96
NPAS1Q99742 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPAS1Q99742 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.05■□□□□ 0.96
NPAS1Q99742 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPAS1Q99742 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPAS1Q99742 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.05■□□□□ 0.96
NPAS1Q99742 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.05■□□□□ 0.96
NPAS1Q99742 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPAS1Q99742 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.04■□□□□ 0.96
NPAS1Q99742 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NPAS1Q99742 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.04■□□□□ 0.96
NPAS1Q99742 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
NPAS1Q99742 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms