Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 AC142472.1-201ENST00000612013 1741 ntBASIC7.08□□□□□ -1.28
SYNE1Q8NF91 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 AC135731.1-201ENST00000569415 2548 ntBASIC7.08□□□□□ -1.28
SYNE1Q8NF91 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 UNC93B3-201ENST00000308076 687 ntBASIC7.07□□□□□ -1.28
SYNE1Q8NF91 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 SHF-208ENST00000560734 1731 ntTSL 3 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SYNE1Q8NF91 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 MIR939-201ENST00000401314 82 ntBASIC7.06□□□□□ -1.28
SYNE1Q8NF91 AL356740.2-201ENST00000601559 647 ntBASIC7.06□□□□□ -1.28
SYNE1Q8NF91 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 AL121749.1-202ENST00000609313 2153 ntBASIC7.06□□□□□ -1.28
SYNE1Q8NF91 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 KRT18P10-201ENST00000388836 1287 ntBASIC7.06□□□□□ -1.28
SYNE1Q8NF91 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 AL355001.2-201ENST00000620617 1191 ntBASIC7.06□□□□□ -1.28
SYNE1Q8NF91 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
SYNE1Q8NF91 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TFPT-201ENST00000391757 774 ntTSL 5 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 AC026271.2-201ENST00000428091 497 ntBASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CLTA-210ENST00000540080 989 ntTSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 EXOG-217ENST00000630638 197 ntTSL 5 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 AC024257.2-201ENST00000549699 147 ntBASIC7.05□□□□□ -1.28
SYNE1Q8NF91 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SYNE1Q8NF91 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms