Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13CQ709C8 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS13CQ709C8 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS13CQ709C8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13CQ709C8 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS13CQ709C8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13CQ709C8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13CQ709C8 AF213884.3-201ENST00000563833 479 ntBASIC19.61■□□□□ 0.73
VPS13CQ709C8 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13CQ709C8 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS13CQ709C8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13CQ709C8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13CQ709C8 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13CQ709C8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13CQ709C8 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS13CQ709C8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13CQ709C8 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13CQ709C8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13CQ709C8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS13CQ709C8 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13CQ709C8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS13CQ709C8 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS13CQ709C8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13CQ709C8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VPS13CQ709C8 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
VPS13CQ709C8 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13CQ709C8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.58■□□□□ 0.73
VPS13CQ709C8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS13CQ709C8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.58■□□□□ 0.73
VPS13CQ709C8 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13CQ709C8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13CQ709C8 IKBKGP1-201ENST00000612193 1073 ntBASIC19.58■□□□□ 0.72
VPS13CQ709C8 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VPS13CQ709C8 IRS3P-201ENST00000223076 1006 ntBASIC19.57■□□□□ 0.72
VPS13CQ709C8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS13CQ709C8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS13CQ709C8 AC022517.1-201ENST00000592429 346 ntBASIC19.57■□□□□ 0.72
VPS13CQ709C8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13CQ709C8 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13CQ709C8 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS13CQ709C8 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13CQ709C8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS13CQ709C8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13CQ709C8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS13CQ709C8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13CQ709C8 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13CQ709C8 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VPS13CQ709C8 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13CQ709C8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13CQ709C8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13CQ709C8 AC092437.1-201ENST00000624794 1048 ntBASIC19.56■□□□□ 0.72
VPS13CQ709C8 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS13CQ709C8 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13CQ709C8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13CQ709C8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13CQ709C8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13CQ709C8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 SRD5A1P1-201ENST00000442297 786 ntBASIC19.54■□□□□ 0.72
VPS13CQ709C8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13CQ709C8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13CQ709C8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13CQ709C8 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13CQ709C8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13CQ709C8 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.53■□□□□ 0.72
VPS13CQ709C8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13CQ709C8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13CQ709C8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
VPS13CQ709C8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13CQ709C8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13CQ709C8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
VPS13CQ709C8 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS13CQ709C8 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VPS13CQ709C8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS13CQ709C8 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS13CQ709C8 AC034268.1-201ENST00000441047 882 ntBASIC19.52■□□□□ 0.71
VPS13CQ709C8 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS13CQ709C8 MIR4767-201ENST00000582827 78 ntBASIC19.52■□□□□ 0.71
VPS13CQ709C8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.52■□□□□ 0.71
VPS13CQ709C8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.52■□□□□ 0.71
VPS13CQ709C8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS13CQ709C8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS13CQ709C8 CA15P2-201ENST00000611168 834 ntBASIC19.51■□□□□ 0.71
VPS13CQ709C8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13CQ709C8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS13CQ709C8 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS13CQ709C8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS13CQ709C8 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
VPS13CQ709C8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VPS13CQ709C8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms