Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
PTCHD3Q3KNS1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
PTCHD3Q3KNS1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCHD3Q3KNS1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.68■■□□□ 1.22
PTCHD3Q3KNS1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD3Q3KNS1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 HLA-L-211ENST00000482052 1765 ntBASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCHD3Q3KNS1 AC090877.2-201ENST00000558441 1738 ntBASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD3Q3KNS1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PTCHD3Q3KNS1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.64■■□□□ 1.22
PTCHD3Q3KNS1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
PTCHD3Q3KNS1 LINC00543-201ENST00000567234 1845 ntBASIC22.64■■□□□ 1.22
PTCHD3Q3KNS1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
PTCHD3Q3KNS1 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTCHD3Q3KNS1 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD3Q3KNS1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCHD3Q3KNS1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCHD3Q3KNS1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCHD3Q3KNS1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCHD3Q3KNS1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD3Q3KNS1 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD3Q3KNS1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 AC022616.5-201ENST00000518796 181 ntBASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 AC141586.4-201ENST00000624558 1573 ntBASIC22.59■■□□□ 1.21
PTCHD3Q3KNS1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.58■■□□□ 1.21
PTCHD3Q3KNS1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD3Q3KNS1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD3Q3KNS1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD3Q3KNS1 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.58■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms