Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
CDX1P47902 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX1P47902 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CDX1P47902 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX1P47902 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDX1P47902 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX1P47902 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX1P47902 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX1P47902 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX1P47902 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CDX1P47902 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX1P47902 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX1P47902 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CDX1P47902 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CDX1P47902 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX1P47902 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDX1P47902 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX1P47902 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX1P47902 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX1P47902 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX1P47902 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CDX1P47902 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
CDX1P47902 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 AC087393.1-201ENST00000582896 145 ntBASIC18.68■□□□□ 0.58
CDX1P47902 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX1P47902 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CDX1P47902 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX1P47902 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDX1P47902 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX1P47902 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX1P47902 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX1P47902 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX1P47902 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX1P47902 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX1P47902 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX1P47902 RPS2P7-201ENST00000447334 885 ntBASIC18.67■□□□□ 0.58
CDX1P47902 AC010980.1-201ENST00000587192 1142 ntBASIC18.67■□□□□ 0.58
CDX1P47902 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX1P47902 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX1P47902 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.66■□□□□ 0.58
CDX1P47902 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.66■□□□□ 0.58
CDX1P47902 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 AC019171.1-201ENST00000601251 1056 ntBASIC18.66■□□□□ 0.58
CDX1P47902 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CDX1P47902 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX1P47902 SLC25A24-204ENST00000569674 2357 ntBASIC18.66■□□□□ 0.58
CDX1P47902 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 RARRES2P1-201ENST00000474487 481 ntBASIC18.65■□□□□ 0.58
CDX1P47902 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
CDX1P47902 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX1P47902 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX1P47902 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CDX1P47902 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CDX1P47902 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX1P47902 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX1P47902 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX1P47902 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX1P47902 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX1P47902 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX1P47902 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX1P47902 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDX1P47902 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.63■□□□□ 0.57
CDX1P47902 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
CDX1P47902 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.63■□□□□ 0.57
CDX1P47902 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX1P47902 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX1P47902 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX1P47902 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CDX1P47902 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms