Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 YBX1P4-201ENST00000392794 808 ntBASIC23.65■■□□□ 1.38
HLA-DQB2P05538 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 AC103724.3-201ENST00000564481 992 ntBASIC23.65■■□□□ 1.38
HLA-DQB2P05538 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 AC093323.1-202ENST00000635031 2045 ntBASIC23.65■■□□□ 1.38
HLA-DQB2P05538 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
HLA-DQB2P05538 THA1P-201ENST00000590384 1145 ntBASIC23.64■■□□□ 1.37
HLA-DQB2P05538 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
HLA-DQB2P05538 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
HLA-DQB2P05538 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HLA-DQB2P05538 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HLA-DQB2P05538 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.63■■□□□ 1.37
HLA-DQB2P05538 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
HLA-DQB2P05538 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 LINC00543-201ENST00000567234 1845 ntBASIC23.61■■□□□ 1.37
HLA-DQB2P05538 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 MIR4281-201ENST00000580852 62 ntBASIC23.61■■□□□ 1.37
HLA-DQB2P05538 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HLA-DQB2P05538 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HLA-DQB2P05538 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HLA-DQB2P05538 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HLA-DQB2P05538 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HLA-DQB2P05538 RARRES2P1-201ENST00000474487 481 ntBASIC23.59■■□□□ 1.37
HLA-DQB2P05538 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HLA-DQB2P05538 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
HLA-DQB2P05538 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
HLA-DQB2P05538 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
HLA-DQB2P05538 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.57■■□□□ 1.36
HLA-DQB2P05538 AC141586.4-201ENST00000624558 1573 ntBASIC23.57■■□□□ 1.36
HLA-DQB2P05538 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 AL031848.2-201ENST00000607670 837 ntBASIC23.56■■□□□ 1.36
HLA-DQB2P05538 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HLA-DQB2P05538 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.55■■□□□ 1.36
HLA-DQB2P05538 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
HLA-DQB2P05538 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.55■■□□□ 1.36
HLA-DQB2P05538 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HLA-DQB2P05538 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
HLA-DQB2P05538 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
HLA-DQB2P05538 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.54■■□□□ 1.36
HLA-DQB2P05538 AF131216.4-201ENST00000638924 1588 ntBASIC23.53■■□□□ 1.36
HLA-DQB2P05538 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HLA-DQB2P05538 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.53■■□□□ 1.36
HLA-DQB2P05538 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HLA-DQB2P05538 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
HLA-DQB2P05538 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HLA-DQB2P05538 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HLA-DQB2P05538 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.35
HLA-DQB2P05538 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HLA-DQB2P05538 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
HLA-DQB2P05538 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HLA-DQB2P05538 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms