Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SGCEO43556 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.41■□□□□ 0.86
SGCEO43556 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SGCEO43556 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SGCEO43556 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SGCEO43556 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.4■□□□□ 0.86
SGCEO43556 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.4■□□□□ 0.86
SGCEO43556 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 AC090877.2-201ENST00000558441 1738 ntBASIC20.4■□□□□ 0.86
SGCEO43556 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.4■□□□□ 0.86
SGCEO43556 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SGCEO43556 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SGCEO43556 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
SGCEO43556 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SGCEO43556 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SGCEO43556 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.39■□□□□ 0.85
SGCEO43556 AL033527.3-201ENST00000566366 1196 ntBASIC20.39■□□□□ 0.85
SGCEO43556 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SGCEO43556 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SGCEO43556 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SGCEO43556 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.38■□□□□ 0.85
SGCEO43556 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 AC022616.5-201ENST00000518796 181 ntBASIC20.38■□□□□ 0.85
SGCEO43556 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.38■□□□□ 0.85
SGCEO43556 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.38■□□□□ 0.85
SGCEO43556 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.38■□□□□ 0.85
SGCEO43556 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SGCEO43556 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.37■□□□□ 0.85
SGCEO43556 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SGCEO43556 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SGCEO43556 HLA-L-211ENST00000482052 1765 ntBASIC20.37■□□□□ 0.85
SGCEO43556 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SGCEO43556 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SGCEO43556 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.37■□□□□ 0.85
SGCEO43556 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SGCEO43556 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.37■□□□□ 0.85
SGCEO43556 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SGCEO43556 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SGCEO43556 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SGCEO43556 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.36■□□□□ 0.85
SGCEO43556 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SGCEO43556 LINC00543-201ENST00000567234 1845 ntBASIC20.36■□□□□ 0.85
SGCEO43556 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SGCEO43556 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.36■□□□□ 0.85
SGCEO43556 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SGCEO43556 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 AC141586.4-201ENST00000624558 1573 ntBASIC20.35■□□□□ 0.85
SGCEO43556 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.35■□□□□ 0.85
SGCEO43556 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.35■□□□□ 0.85
SGCEO43556 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.35■□□□□ 0.85
SGCEO43556 AC010980.1-201ENST00000587192 1142 ntBASIC20.35■□□□□ 0.85
SGCEO43556 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SGCEO43556 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.35■□□□□ 0.85
SGCEO43556 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SGCEO43556 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SGCEO43556 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.34■□□□□ 0.85
SGCEO43556 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SGCEO43556 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SGCEO43556 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.34■□□□□ 0.85
SGCEO43556 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.34■□□□□ 0.85
SGCEO43556 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.34■□□□□ 0.85
SGCEO43556 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SGCEO43556 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SGCEO43556 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
SGCEO43556 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SGCEO43556 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SGCEO43556 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.33■□□□□ 0.85
SGCEO43556 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.33■□□□□ 0.85
SGCEO43556 AC011551.1-201ENST00000614101 683 ntBASIC20.33■□□□□ 0.85
SGCEO43556 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.33■□□□□ 0.84
SGCEO43556 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SGCEO43556 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
SGCEO43556 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SGCEO43556 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.33■□□□□ 0.84
SGCEO43556 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SGCEO43556 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.32■□□□□ 0.84
SGCEO43556 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SGCEO43556 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SGCEO43556 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SGCEO43556 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.32■□□□□ 0.84
SGCEO43556 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SGCEO43556 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SGCEO43556 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SGCEO43556 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SGCEO43556 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.32■□□□□ 0.84
SGCEO43556 PVT1_1.1-201ENST00000615125 194 ntBASIC20.32■□□□□ 0.84
SGCEO43556 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms