Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHKB-CPT1BH3BT56 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 BCL2-203ENST00000589955 5011 ntBASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHKB-CPT1BH3BT56 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.31
CHKB-CPT1BH3BT56 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
CHKB-CPT1BH3BT56 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.31
CHKB-CPT1BH3BT56 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHKB-CPT1BH3BT56 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHKB-CPT1BH3BT56 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 MVK-208ENST00000539696 608 ntTSL 5 BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHKB-CPT1BH3BT56 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHKB-CPT1BH3BT56 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC13.04□□□□□ -0.32
CHKB-CPT1BH3BT56 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 ERN1-208ENST00000606895 2068 ntBASIC13.03□□□□□ -0.32
CHKB-CPT1BH3BT56 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC13.02□□□□□ -0.32
CHKB-CPT1BH3BT56 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms