Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX2-6A6NCS4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX2-6A6NCS4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX2-6A6NCS4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-6A6NCS4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-6A6NCS4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-6A6NCS4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-6A6NCS4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-6A6NCS4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
NKX2-6A6NCS4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-6A6NCS4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 PBX2P1-201ENST00000493219 1291 ntBASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-6A6NCS4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 AC133561.4-201ENST00000566112 224 ntBASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 SNX5-217ENST00000606557 1087 ntBASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-6A6NCS4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-6A6NCS4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-6A6NCS4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.58■□□□□ 0.89
NKX2-6A6NCS4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX2-6A6NCS4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.58■□□□□ 0.89
NKX2-6A6NCS4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-6A6NCS4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 AC090877.2-201ENST00000558441 1738 ntBASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-6A6NCS4 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 AC106739.1-201ENST00000617035 715 ntBASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-6A6NCS4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 ZNRF2P3-201ENST00000424200 374 ntBASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 AC142381.2-201ENST00000566120 298 ntBASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-6A6NCS4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 UNC93B3-201ENST00000308076 687 ntBASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-6A6NCS4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-6A6NCS4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX2-6A6NCS4 AC145676.1-201ENST00000514988 2004 ntBASIC20.53■□□□□ 0.88
NKX2-6A6NCS4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.53■□□□□ 0.88
NKX2-6A6NCS4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NKX2-6A6NCS4 MIR6722-201ENST00000617286 78 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms