Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC087393.1-201ENST00000582896 145 ntBASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AL139246.5-201ENST00000606645 996 ntBASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AC104564.3-201ENST00000582367 638 ntBASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 HLA-L-211ENST00000482052 1765 ntBASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AC139795.1-202ENST00000500444 432 ntBASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 LONRF2P2-201ENST00000439212 571 ntBASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms