Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
MMP28Q9H239 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.83□□□□□ -0.2
MMP28Q9H239 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 AC098831.1-202ENST00000438821 336 ntBASIC13.83□□□□□ -0.2
MMP28Q9H239 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.83□□□□□ -0.2
MMP28Q9H239 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 Z82170.1-201ENST00000625081 3192 ntBASIC13.83□□□□□ -0.2
MMP28Q9H239 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MMP28Q9H239 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.83□□□□□ -0.2
MMP28Q9H239 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MMP28Q9H239 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 AC067750.1-201ENST00000608826 6545 ntBASIC13.82□□□□□ -0.2
MMP28Q9H239 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
MMP28Q9H239 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.82□□□□□ -0.2
MMP28Q9H239 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 AC097359.2-201ENST00000604992 2389 ntBASIC13.82□□□□□ -0.2
MMP28Q9H239 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.82□□□□□ -0.2
MMP28Q9H239 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
MMP28Q9H239 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MMP28Q9H239 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms