Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC124067.4-201ENST00000519691 2379 ntBASIC20.41■□□□□ 0.86
CSB-PGBD3P0DP91 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CSB-PGBD3P0DP91 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CSB-PGBD3P0DP91 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CSB-PGBD3P0DP91 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 AL645937.2-201ENST00000396808 931 ntBASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 FGFR3P5-201ENST00000564496 886 ntBASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 MIR4722-201ENST00000578292 60 ntBASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC20.4■□□□□ 0.86
CSB-PGBD3P0DP91 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CSB-PGBD3P0DP91 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 POM121L8P-201ENST00000417732 1281 ntBASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 POM121L9P-203ENST00000441984 1285 ntBASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 AC021723.1-201ENST00000486306 515 ntBASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 AC005740.2-201ENST00000511085 419 ntBASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.39■□□□□ 0.85
CSB-PGBD3P0DP91 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 CRCP-204ENST00000398684 492 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 TMEM198B-204ENST00000484016 896 ntBASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AC100850.1-201ENST00000506768 649 ntBASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AP003171.2-201ENST00000528208 925 ntBASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 AL662844.4-201ENST00000606367 2838 ntBASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSB-PGBD3P0DP91 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms