Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CD74P04233 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.11□□□□□ -0.31
CD74P04233 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CD74P04233 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.11□□□□□ -0.31
CD74P04233 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CD74P04233 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CD74P04233 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CD74P04233 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.1□□□□□ -0.31
CD74P04233 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.1□□□□□ -0.31
CD74P04233 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.1□□□□□ -0.31
CD74P04233 LINC01711-201ENST00000598340 967 ntBASIC13.1□□□□□ -0.31
CD74P04233 AC023141.13-201ENST00000604991 943 ntBASIC13.1□□□□□ -0.31
CD74P04233 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.1□□□□□ -0.31
CD74P04233 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.1□□□□□ -0.31
CD74P04233 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CD74P04233 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.09□□□□□ -0.31
CD74P04233 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.09□□□□□ -0.31
CD74P04233 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
CD74P04233 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 UPK3BP1-201ENST00000428678 509 ntBASIC13.09□□□□□ -0.31
CD74P04233 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 AL139010.1-201ENST00000454878 894 ntBASIC13.09□□□□□ -0.31
CD74P04233 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 AL138918.1-201ENST00000568306 659 ntBASIC13.09□□□□□ -0.31
CD74P04233 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.09□□□□□ -0.31
CD74P04233 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 AC093458.2-201ENST00000623150 629 ntBASIC13.09□□□□□ -0.31
CD74P04233 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.09□□□□□ -0.31
CD74P04233 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.09□□□□□ -0.31
CD74P04233 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CD74P04233 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms