Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDKL5O76039 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CDKL5O76039 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.09■□□□□ 0.49
CDKL5O76039 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CDKL5O76039 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.09■□□□□ 0.49
CDKL5O76039 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
CDKL5O76039 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CDKL5O76039 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.08■□□□□ 0.49
CDKL5O76039 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDKL5O76039 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.08■□□□□ 0.49
CDKL5O76039 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.08■□□□□ 0.48
CDKL5O76039 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 FAM8A3P-201ENST00000427218 844 ntBASIC18.08■□□□□ 0.48
CDKL5O76039 GHSR-202ENST00000427970 912 ntBASIC18.08■□□□□ 0.48
CDKL5O76039 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.08■□□□□ 0.48
CDKL5O76039 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.08■□□□□ 0.48
CDKL5O76039 AC008738.7-201ENST00000609744 511 ntBASIC18.08■□□□□ 0.48
CDKL5O76039 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.08■□□□□ 0.48
CDKL5O76039 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.08■□□□□ 0.48
CDKL5O76039 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CDKL5O76039 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDKL5O76039 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.07■□□□□ 0.48
CDKL5O76039 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.07■□□□□ 0.48
CDKL5O76039 WASH3P-207ENST00000560956 1394 ntBASIC18.07■□□□□ 0.48
CDKL5O76039 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CDKL5O76039 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.07■□□□□ 0.48
CDKL5O76039 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.07■□□□□ 0.48
CDKL5O76039 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.07■□□□□ 0.48
CDKL5O76039 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.07■□□□□ 0.48
CDKL5O76039 SRD5A3P1-201ENST00000603021 949 ntBASIC18.07■□□□□ 0.48
CDKL5O76039 AL158212.4-201ENST00000624062 1286 ntBASIC18.07■□□□□ 0.48
CDKL5O76039 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 AC004840.1-201ENST00000636359 365 ntBASIC18.07■□□□□ 0.48
CDKL5O76039 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.07■□□□□ 0.48
CDKL5O76039 MROH4P-201ENST00000431302 1578 ntBASIC18.07■□□□□ 0.48
CDKL5O76039 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CDKL5O76039 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CDKL5O76039 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDKL5O76039 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDKL5O76039 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDKL5O76039 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDKL5O76039 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDKL5O76039 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.06■□□□□ 0.48
CDKL5O76039 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms