Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 AL138781.2-201ENST00000617896 1843 ntBASIC6.74□□□□□ -1.33
USH2AO75445 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 AC136604.1-202ENST00000425471 771 ntBASIC6.74□□□□□ -1.33
USH2AO75445 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC6.74□□□□□ -1.33
USH2AO75445 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC6.74□□□□□ -1.33
USH2AO75445 AC068867.1-201ENST00000559855 150 ntBASIC6.74□□□□□ -1.33
USH2AO75445 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 MIR3180-2-201ENST00000581748 88 ntBASIC6.74□□□□□ -1.33
USH2AO75445 SIGLEC18P-201ENST00000602271 909 ntBASIC6.74□□□□□ -1.33
USH2AO75445 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 PHKG1P2-201ENST00000457537 863 ntBASIC6.74□□□□□ -1.33
USH2AO75445 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 DBP-202ENST00000593500 712 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 REXO1L2P-201ENST00000425429 2069 ntBASIC6.74□□□□□ -1.33
USH2AO75445 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MAGEA7P-201ENST00000436482 942 ntBASIC6.74□□□□□ -1.33
USH2AO75445 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 AC073592.2-201ENST00000623062 780 ntBASIC6.74□□□□□ -1.33
USH2AO75445 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 AP001184.1-201ENST00000637936 376 ntBASIC6.74□□□□□ -1.33
USH2AO75445 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC6.73□□□□□ -1.33
USH2AO75445 AL807761.2-201ENST00000422849 729 ntBASIC6.73□□□□□ -1.33
USH2AO75445 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC6.73□□□□□ -1.33
USH2AO75445 DUX4L47-201ENST00000566374 394 ntBASIC6.73□□□□□ -1.33
USH2AO75445 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC6.73□□□□□ -1.33
USH2AO75445 AP005264.6-204ENST00000588436 719 ntBASIC6.73□□□□□ -1.33
USH2AO75445 CYP4F36P-201ENST00000589193 186 ntBASIC6.73□□□□□ -1.33
USH2AO75445 AC254633.1-201ENST00000606790 345 ntBASIC6.73□□□□□ -1.33
USH2AO75445 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USH2AO75445 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USH2AO75445 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms