Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 KIAA1644-201ENST00000381176 6751 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 HAUS5-201ENST00000203166 4283 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 HYPK-201ENST00000406925 4777 ntAPPRIS P2 TSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 GSN-209ENST00000449733 2702 ntTSL 2 BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
CHKB-CPT1BH3BT56 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 KCNMB1-201ENST00000274629 5052 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 API5-202ENST00000420461 2009 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TPT1-212ENST00000530705 4735 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ADPRH-204ENST00000478399 4546 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ABAT-201ENST00000268251 4836 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC025279.1-201ENST00000604430 4818 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CLIP1-219ENST00000620786 5913 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PIK3C2B-204ENST00000424712 7522 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 KIF26B-201ENST00000366518 12113 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PNMA6B-201ENST00000538162 1200 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC104390.1-201ENST00000555663 520 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 SOX15-203ENST00000570788 1093 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC011767.1-201ENST00000617410 1153 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 AC112497.1-201ENST00000624824 639 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CCPG1-201ENST00000310958 6822 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PAPLN-208ENST00000555445 4282 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PKD1L2-203ENST00000525539 7379 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 LINC00346-201ENST00000538077 6265 ntBASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 SH3BGRL2-201ENST00000369838 4653 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC8.59□□□□□ -1.03
CHKB-CPT1BH3BT56 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC8.59□□□□□ -1.04
CHKB-CPT1BH3BT56 AGGF1-201ENST00000312916 4509 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.04
CHKB-CPT1BH3BT56 ARHGAP32-206ENST00000527272 5289 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
CHKB-CPT1BH3BT56 ELN-216ENST00000429192 3298 ntAPPRIS ALT2 TSL 2 BASIC8.58□□□□□ -1.04
CHKB-CPT1BH3BT56 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
CHKB-CPT1BH3BT56 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms