RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DCAF8L2P0C7V8 631 aa20.23■□□□□ 0.83
CLIP1-219ENST00000620786 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
CLIP1-219ENST00000620786 SUPT5HO00267 1087 aaKnown RBP18.83■□□□□ 0.6
CLIP1-219ENST00000620786 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
CLIP1-219ENST00000620786 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
CLIP1-219ENST00000620786 APLP2Q06481 763 aa18.08■□□□□ 0.48
CLIP1-219ENST00000620786 FAM9AQ8IZU1 332 aaPredicted RBP18.06■□□□□ 0.48
CLIP1-219ENST00000620786 TTBK1Q5TCY1 1321 aaPredicted RBP17.74■□□□□ 0.43
CLIP1-219ENST00000620786 RANGAP1P46060 587 aaPredicted RBP17.71■□□□□ 0.43
CLIP1-219ENST00000620786 PELP1Q8IZL8 1130 aaKnown RBP17.63■□□□□ 0.41
CLIP1-219ENST00000620786 ATP1B4Q9UN42 357 aaPredicted RBP17.63■□□□□ 0.41
CLIP1-219ENST00000620786 TRIM41Q8WV44 630 aa17.45■□□□□ 0.38
CLIP1-219ENST00000620786 UBTFP17480 764 aaKnown RBP17.35■□□□□ 0.37
CLIP1-219ENST00000620786 PCGF6Q9BYE7 350 aa17.34■□□□□ 0.37
CLIP1-219ENST00000620786 CCER1Q8TC90 406 aaPredicted RBP17.16■□□□□ 0.34
CLIP1-219ENST00000620786 MYT1LQ9UL68 1186 aa17.13■□□□□ 0.33
CLIP1-219ENST00000620786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.06■□□□□ 0.32
CLIP1-219ENST00000620786 HNRNPUL2Q1KMD3 747 aaKnown RBP17.06■□□□□ 0.32
CLIP1-219ENST00000620786 ZEB1P37275 1124 aaPredicted RBP16.98■□□□□ 0.31
CLIP1-219ENST00000620786 ERICH6Q7L0X2 663 aa16.95■□□□□ 0.3
CLIP1-219ENST00000620786 CENPBP07199 599 aaPredicted RBP16.92■□□□□ 0.3
CLIP1-219ENST00000620786 PPARGC1BQ86YN6 1023 aaKnown RBP16.91■□□□□ 0.3
CLIP1-219ENST00000620786 ITGAEP38570 1179 aa16.83■□□□□ 0.28
CLIP1-219ENST00000620786 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
CLIP1-219ENST00000620786 NEFLP07196 543 aa16.78■□□□□ 0.28
CLIP1-219ENST00000620786 POLR3GLQ9BT43 218 aa16.76■□□□□ 0.27
CLIP1-219ENST00000620786 YTHDC1Q96MU7 727 aaKnown RBP16.73■□□□□ 0.27
CLIP1-219ENST00000620786 ABCC9O60706 1549 aa16.73■□□□□ 0.27
CLIP1-219ENST00000620786 PABPN1Q86U42 306 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLIP1-219ENST00000620786 SLC4A1APQ9BWU0 796 aaKnown RBP16.6■□□□□ 0.25
CLIP1-219ENST00000620786 CNGB1Q14028 1251 aaPredicted RBP16.55■□□□□ 0.24
CLIP1-219ENST00000620786 TRIM26Q12899 539 aaPredicted RBP16.53■□□□□ 0.24
CLIP1-219ENST00000620786 FBLN2P98095 1184 aa16.46■□□□□ 0.23
CLIP1-219ENST00000620786 LOC105371045A0A1W2PR82 267 aa16.45■□□□□ 0.22
CLIP1-219ENST00000620786 FAM50AQ14320 339 aaKnown RBP16.42■□□□□ 0.22
CLIP1-219ENST00000620786 DAXXQ9UER7 740 aaPredicted RBP16.37■□□□□ 0.21
CLIP1-219ENST00000620786 TRIM52Q96A61 297 aa16.37■□□□□ 0.21
CLIP1-219ENST00000620786 BCANQ96GW7 911 aa16.2■□□□□ 0.18
CLIP1-219ENST00000620786 HRCP23327 699 aa16.18■□□□□ 0.18
CLIP1-219ENST00000620786 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
CLIP1-219ENST00000620786 ZNF326Q5BKZ1 582 aaKnown RBP16.17■□□□□ 0.18
CLIP1-219ENST00000620786 ARID3CA6NKF2 412 aa16.15■□□□□ 0.18
CLIP1-219ENST00000620786 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
CLIP1-219ENST00000620786 P3H3Q8IVL6 736 aa16.09■□□□□ 0.17
CLIP1-219ENST00000620786 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
CLIP1-219ENST00000620786 ZNF777Q9ULD5 760 aaPredicted RBP16.03■□□□□ 0.16
CLIP1-219ENST00000620786 ESF1Q9H501 851 aaKnown RBP16.02■□□□□ 0.16
CLIP1-219ENST00000620786 ZNF316A6NFI3 1004 aaPredicted RBP15.99■□□□□ 0.15
CLIP1-219ENST00000620786 PLPPR3Q6T4P5 718 aa15.98■□□□□ 0.15
CLIP1-219ENST00000620786 ZBTB47Q9UFB7 747 aaPredicted RBP15.95■□□□□ 0.14
CLIP1-219ENST00000620786 SCRIBQ14160 1630 aa15.93■□□□□ 0.14
CLIP1-219ENST00000620786 NPM1P06748 294 aaKnown RBP eCLIP15.93■□□□□ 0.14
CLIP1-219ENST00000620786 CDK11AQ9UQ88 783 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-219ENST00000620786 DIEXFQ68CQ4 756 aaKnown RBP15.92■□□□□ 0.14
CLIP1-219ENST00000620786 NEFMP07197 916 aa15.91■□□□□ 0.14
CLIP1-219ENST00000620786 MYT1Q01538 1121 aa15.89■□□□□ 0.13
CLIP1-219ENST00000620786 STAG3Q9UJ98 1225 aa15.89■□□□□ 0.13
CLIP1-219ENST00000620786 ANP32CO43423 234 aa15.87■□□□□ 0.13
CLIP1-219ENST00000620786 BCL11AQ9H165 835 aa15.85■□□□□ 0.13
CLIP1-219ENST00000620786 CANXP27824 592 aaKnown RBP15.85■□□□□ 0.13
CLIP1-219ENST00000620786 CHGAP10645 457 aaKnown RBP15.84■□□□□ 0.13
CLIP1-219ENST00000620786 CSRNP3Q8WYN3 585 aa15.84■□□□□ 0.13
CLIP1-219ENST00000620786 RTL5Q5HYW3 569 aaPredicted RBP15.77■□□□□ 0.11
CLIP1-219ENST00000620786 CHMP7Q8WUX9 453 aaPredicted RBP15.67■□□□□ 0.1
CLIP1-219ENST00000620786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.12e-7■■□□□ 13.3
CLIP1-219ENST00000620786 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
CLIP1-219ENST00000620786 CHIC2Q9UKJ5 165 aa15.58■□□□□ 0.09
CLIP1-219ENST00000620786 TONSLQ96HA7 1378 aa15.57■□□□□ 0.08
CLIP1-219ENST00000620786 ZCCHC6Q5VYS8 1495 aaKnown RBP15.54■□□□□ 0.08
CLIP1-219ENST00000620786 RB1CC1Q8TDY2 1594 aa15.54■□□□□ 0.08
CLIP1-219ENST00000620786 TSPY4P0CV99 314 aa15.53■□□□□ 0.08
CLIP1-219ENST00000620786 TSPY10P0CW01 314 aa15.53■□□□□ 0.08
CLIP1-219ENST00000620786 CCDC180Q9P1Z9 1646 aa15.5■□□□□ 0.07
CLIP1-219ENST00000620786 A0A0G2JS52 829 aa15.49■□□□□ 0.07
CLIP1-219ENST00000620786 KCNH8Q96L42 1107 aa15.49■□□□□ 0.07
CLIP1-219ENST00000620786 MTUS2Q5JR59 1369 aa15.47■□□□□ 0.07
CLIP1-219ENST00000620786 SENP3Q9H4L4 574 aaPredicted RBP15.47■□□□□ 0.07
CLIP1-219ENST00000620786 ZBTB7CA1YPR0 619 aa15.45■□□□□ 0.06
CLIP1-219ENST00000620786 KDM2AQ9Y2K7 1162 aa15.45■□□□□ 0.06
CLIP1-219ENST00000620786 PPP1R15AO75807 674 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-219ENST00000620786 PLEKHG5O94827 1062 aa15.44■□□□□ 0.06
CLIP1-219ENST00000620786 ARID4BQ4LE39 1312 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-219ENST00000620786 C14orf37Q86TY3 774 aa15.42■□□□□ 0.06
CLIP1-219ENST00000620786 ERCC6Q03468 1493 aa15.4■□□□□ 0.06
CLIP1-219ENST00000620786 GTF3C3Q9Y5Q9 886 aa15.4■□□□□ 0.06
CLIP1-219ENST00000620786 SALL2Q9Y467 1007 aaPredicted RBP15.38■□□□□ 0.05
CLIP1-219ENST00000620786 FAM9BQ8IZU0 186 aa15.37■□□□□ 0.05
CLIP1-219ENST00000620786 PLEKHD1A6NEE1 506 aa15.36■□□□□ 0.05
CLIP1-219ENST00000620786 WDR43Q15061 677 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLIP1-219ENST00000620786 NPM2Q86SE8 214 aaKnown RBP15.35■□□□□ 0.05
CLIP1-219ENST00000620786 HAP1P54257 671 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-219ENST00000620786 ANP32AP39687 249 aaKnown RBP15.32■□□□□ 0.04
CLIP1-219ENST00000620786 BAZ1BQ9UIG0 1483 aaKnown RBP15.32■□□□□ 0.04
CLIP1-219ENST00000620786 HSP90AA1P07900 732 aaKnown RBP15.31■□□□□ 0.04
CLIP1-219ENST00000620786 TMC1Q8TDI8 760 aa15.31■□□□□ 0.04
CLIP1-219ENST00000620786 DDX10Q13206 875 aaKnown RBP15.31■□□□□ 0.04
CLIP1-219ENST00000620786 RRP7BPQ9NSQ0 103 aa15.31■□□□□ 0.04
CLIP1-219ENST00000620786 HNRNPUQ00839 825 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLIP1-219ENST00000620786 RSF1Q96T23 1441 aaPredicted RBP15.28■□□□□ 0.04
CLIP1-219ENST00000620786 CLIP1P30622 1438 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms