RNA–Protein interactions for RNA: ENST00000538077.2

LINC00346-201, long intergenic non-protein coding RNA 346, humanhuman

BASIC

Gene LINC00346, Length 6,265 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346-201ENST00000538077 DCAF8L2P0C7V8 631 aa19.97■□□□□ 0.79
LINC00346-201ENST00000538077 SUPT5HO00267 1087 aaKnown RBP18.63■□□□□ 0.57
LINC00346-201ENST00000538077 EHMT2Q96KQ7 1210 aa18.58■□□□□ 0.56
LINC00346-201ENST00000538077 NISCHQ9Y2I1 1504 aa18.51■□□□□ 0.55
LINC00346-201ENST00000538077 SHROOM4Q9ULL8 1493 aa18.43■□□□□ 0.54
LINC00346-201ENST00000538077 TTBK1Q5TCY1 1321 aaPredicted RBP17.87■□□□□ 0.45
LINC00346-201ENST00000538077 FAM9AQ8IZU1 332 aaPredicted RBP17.73■□□□□ 0.43
LINC00346-201ENST00000538077 APLP2Q06481 763 aa17.72■□□□□ 0.43
LINC00346-201ENST00000538077 RANGAP1P46060 587 aaPredicted RBP17.71■□□□□ 0.43
LINC00346-201ENST00000538077 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
LINC00346-201ENST00000538077 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
LINC00346-201ENST00000538077 PCGF6Q9BYE7 350 aa17.3■□□□□ 0.36
LINC00346-201ENST00000538077 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
LINC00346-201ENST00000538077 UBTFP17480 764 aaKnown RBP17.06■□□□□ 0.32
LINC00346-201ENST00000538077 CCER1Q8TC90 406 aaPredicted RBP17.03■□□□□ 0.32
LINC00346-201ENST00000538077 PPARGC1BQ86YN6 1023 aaKnown RBP17■□□□□ 0.31
LINC00346-201ENST00000538077 ERICH6Q7L0X2 663 aa16.99■□□□□ 0.31
LINC00346-201ENST00000538077 MYT1LQ9UL68 1186 aa16.93■□□□□ 0.3
LINC00346-201ENST00000538077 YTHDC1Q96MU7 727 aaKnown RBP16.9■□□□□ 0.3
LINC00346-201ENST00000538077 CHIC1Q5VXU3 224 aa16.85■□□□□ 0.29
LINC00346-201ENST00000538077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.8■□□□□ 0.28
LINC00346-201ENST00000538077 HNRNPUL2Q1KMD3 747 aaKnown RBP16.8■□□□□ 0.28
LINC00346-201ENST00000538077 POLR3GLQ9BT43 218 aa16.75■□□□□ 0.27
LINC00346-201ENST00000538077 ITGAEP38570 1179 aa16.75■□□□□ 0.27
LINC00346-201ENST00000538077 CENPBP07199 599 aaPredicted RBP16.74■□□□□ 0.27
LINC00346-201ENST00000538077 CNGB1Q14028 1251 aaPredicted RBP16.7■□□□□ 0.26
LINC00346-201ENST00000538077 NEFLP07196 543 aa16.61■□□□□ 0.25
LINC00346-201ENST00000538077 ZEB1P37275 1124 aaPredicted RBP16.61■□□□□ 0.25
LINC00346-201ENST00000538077 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
LINC00346-201ENST00000538077 MYT1Q01538 1121 aa16.4■□□□□ 0.22
LINC00346-201ENST00000538077 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
LINC00346-201ENST00000538077 PABPN1Q86U42 306 aaKnown RBP eCLIP16.3■□□□□ 0.2
LINC00346-201ENST00000538077 DAXXQ9UER7 740 aaPredicted RBP16.28■□□□□ 0.2
LINC00346-201ENST00000538077 TRIM26Q12899 539 aaPredicted RBP16.25■□□□□ 0.19
LINC00346-201ENST00000538077 FAM50AQ14320 339 aaKnown RBP16.21■□□□□ 0.18
LINC00346-201ENST00000538077 FBLN2P98095 1184 aa16.17■□□□□ 0.18
LINC00346-201ENST00000538077 ABCC9O60706 1549 aa16.16■□□□□ 0.18
LINC00346-201ENST00000538077 TRIM52Q96A61 297 aa16.15■□□□□ 0.18
LINC00346-201ENST00000538077 NEUROD1Q13562 356 aa16.08■□□□□ 0.16
LINC00346-201ENST00000538077 HRCP23327 699 aa16.06■□□□□ 0.16
LINC00346-201ENST00000538077 ZNF326Q5BKZ1 582 aaKnown RBP16.06■□□□□ 0.16
LINC00346-201ENST00000538077 ARID3CA6NKF2 412 aa16.06■□□□□ 0.16
LINC00346-201ENST00000538077 SLC24A1O60721 1099 aa16.04■□□□□ 0.16
LINC00346-201ENST00000538077 CLSPNQ9HAW4 1339 aa16.04■□□□□ 0.16
LINC00346-201ENST00000538077 BCL11AQ9H165 835 aa16.03■□□□□ 0.16
LINC00346-201ENST00000538077 BCANQ96GW7 911 aa16.01■□□□□ 0.15
LINC00346-201ENST00000538077 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
LINC00346-201ENST00000538077 ZNF316A6NFI3 1004 aaPredicted RBP15.94■□□□□ 0.14
LINC00346-201ENST00000538077 P3H3Q8IVL6 736 aa15.9■□□□□ 0.14
LINC00346-201ENST00000538077 DIEXFQ68CQ4 756 aaKnown RBP15.81■□□□□ 0.12
LINC00346-201ENST00000538077 ZNF777Q9ULD5 760 aaPredicted RBP15.8■□□□□ 0.12
LINC00346-201ENST00000538077 CCDC180Q9P1Z9 1646 aa15.74■□□□□ 0.11
LINC00346-201ENST00000538077 CANXP27824 592 aaKnown RBP15.72■□□□□ 0.11
LINC00346-201ENST00000538077 ZBTB47Q9UFB7 747 aaPredicted RBP15.72■□□□□ 0.11
LINC00346-201ENST00000538077 RTL5Q5HYW3 569 aaPredicted RBP15.71■□□□□ 0.1
LINC00346-201ENST00000538077 ANP32CO43423 234 aa15.65■□□□□ 0.1
LINC00346-201ENST00000538077 CHGAP10645 457 aaKnown RBP15.64■□□□□ 0.09
LINC00346-201ENST00000538077 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
LINC00346-201ENST00000538077 SCRIBQ14160 1630 aa15.59■□□□□ 0.09
LINC00346-201ENST00000538077 STAG3Q9UJ98 1225 aa15.59■□□□□ 0.09
LINC00346-201ENST00000538077 SENP3Q9H4L4 574 aaPredicted RBP15.58■□□□□ 0.08
LINC00346-201ENST00000538077 NEFMP07197 916 aa15.57■□□□□ 0.08
LINC00346-201ENST00000538077 PLEKHG5O94827 1062 aa15.51■□□□□ 0.07
LINC00346-201ENST00000538077 SCAF1Q9H7N4 1312 aaKnown RBP15.5■□□□□ 0.07
LINC00346-201ENST00000538077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.46■□□□□ 0.07
LINC00346-201ENST00000538077 CDK11AQ9UQ88 783 aaPredicted RBP15.46■□□□□ 0.07
LINC00346-201ENST00000538077 GTF3C3Q9Y5Q9 886 aa15.45■□□□□ 0.06
LINC00346-201ENST00000538077 NPM2Q86SE8 214 aaKnown RBP15.45■□□□□ 0.06
LINC00346-201ENST00000538077 A0A0G2JS52 829 aa15.43■□□□□ 0.06
LINC00346-201ENST00000538077 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
LINC00346-201ENST00000538077 SALL2Q9Y467 1007 aaPredicted RBP15.41■□□□□ 0.06
LINC00346-201ENST00000538077 ZCCHC6Q5VYS8 1495 aaKnown RBP15.41■□□□□ 0.06
LINC00346-201ENST00000538077 ZBTB7CA1YPR0 619 aa15.4■□□□□ 0.06
LINC00346-201ENST00000538077 CHIC2Q9UKJ5 165 aa15.39■□□□□ 0.05
LINC00346-201ENST00000538077 RB1CC1Q8TDY2 1594 aa15.35■□□□□ 0.05
LINC00346-201ENST00000538077 CSRNP3Q8WYN3 585 aa15.34■□□□□ 0.05
LINC00346-201ENST00000538077 KDM2AQ9Y2K7 1162 aa15.29■□□□□ 0.04
LINC00346-201ENST00000538077 FAM9BQ8IZU0 186 aa15.29■□□□□ 0.04
LINC00346-201ENST00000538077 C14orf37Q86TY3 774 aa15.25■□□□□ 0.03
LINC00346-201ENST00000538077 TONSLQ96HA7 1378 aa15.24■□□□□ 0.03
LINC00346-201ENST00000538077 HSP90AA1P07900 732 aaKnown RBP15.21■□□□□ 0.03
LINC00346-201ENST00000538077 KCNH8Q96L42 1107 aa15.21■□□□□ 0.02
LINC00346-201ENST00000538077 ANP32AP39687 249 aaKnown RBP15.2■□□□□ 0.02
LINC00346-201ENST00000538077 CHMP7Q8WUX9 453 aaPredicted RBP15.2■□□□□ 0.02
LINC00346-201ENST00000538077 DDX10Q13206 875 aaKnown RBP15.18■□□□□ 0.02
LINC00346-201ENST00000538077 FKBP8Q14318 412 aa15.17■□□□□ 0.02
LINC00346-201ENST00000538077 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.02
LINC00346-201ENST00000538077 HIRIP3Q9BW71 556 aaPredicted RBP15.16■□□□□ 0.02
LINC00346-201ENST00000538077 ARID4BQ4LE39 1312 aaPredicted RBP15.13■□□□□ 0.01
LINC00346-201ENST00000538077 ARXQ96QS3 562 aa15.13■□□□□ 0.01
LINC00346-201ENST00000538077 SENP3-EIF4A1A0A087X0R7 540 aa15.12■□□□□ 0.01
LINC00346-201ENST00000538077 NACADO15069 1562 aa15.12■□□□□ 0.01
LINC00346-201ENST00000538077 PPP1R15AO75807 674 aaPredicted RBP15.11■□□□□ 0.01
LINC00346-201ENST00000538077 WDR43Q15061 677 aaKnown RBP eCLIP15.11■□□□□ 0.01
LINC00346-201ENST00000538077 TMC1Q8TDI8 760 aa15.08■□□□□ 0
LINC00346-201ENST00000538077 RRP7BPQ9NSQ0 103 aa15.07■□□□□ 0
LINC00346-201ENST00000538077 TSPY4P0CV99 314 aa15.07■□□□□ 0
LINC00346-201ENST00000538077 TSPY10P0CW01 314 aa15.07■□□□□ 0
LINC00346-201ENST00000538077 HAP1P54257 671 aaPredicted RBP15.07■□□□□ 0
LINC00346-201ENST00000538077 IRX6P78412 446 aaPredicted RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms