Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.64□□□□□ -0.39
FOXA2Q9Y261 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 PMS2P2-201ENST00000425039 1128 ntBASIC12.63□□□□□ -0.39
FOXA2Q9Y261 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 RN7SL828P-201ENST00000607615 303 ntBASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CICP23-201ENST00000605013 2741 ntBASIC12.63□□□□□ -0.39
FOXA2Q9Y261 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CETN4P-206ENST00000642099 2168 ntBASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
FOXA2Q9Y261 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms