Protein–RNA interactions for Protein: Q9UBK2

PPARGC1A, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, humanhuman

Known RBP Predictions only

Length 798 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPARGC1AQ9UBK2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PPARGC1AQ9UBK2 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PPARGC1AQ9UBK2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 LINC01115-203ENST00000606068 577 ntBASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PPARGC1AQ9UBK2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.27■□□□□ 0.19
PPARGC1AQ9UBK2 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 TOMM22P5-201ENST00000416399 439 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AC015922.1-201ENST00000421102 1152 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 SRD5A3P1-201ENST00000603021 949 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.26■□□□□ 0.19
PPARGC1AQ9UBK2 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.25■□□□□ 0.19
PPARGC1AQ9UBK2 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms