Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
MMP28Q9H239 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
MMP28Q9H239 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 AC087163.2-201ENST00000457299 853 ntBASIC13.85□□□□□ -0.19
MMP28Q9H239 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 IGHV3-65-201ENST00000523210 341 ntBASIC13.85□□□□□ -0.19
MMP28Q9H239 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.85□□□□□ -0.19
MMP28Q9H239 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.85□□□□□ -0.19
MMP28Q9H239 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 AC126365.1-201ENST00000578585 1514 ntBASIC13.85□□□□□ -0.19
MMP28Q9H239 AC027612.1-201ENST00000445234 2395 ntBASIC13.85□□□□□ -0.19
MMP28Q9H239 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 TOP3BP1-201ENST00000420768 1380 ntBASIC13.84□□□□□ -0.19
MMP28Q9H239 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 AC005622.1-201ENST00000636801 1703 ntBASIC13.84□□□□□ -0.19
MMP28Q9H239 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.84□□□□□ -0.19
MMP28Q9H239 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.84□□□□□ -0.19
MMP28Q9H239 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 MIR4492-201ENST00000581627 80 ntBASIC13.84□□□□□ -0.19
MMP28Q9H239 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 AC116407.3-201ENST00000623905 1129 ntBASIC13.84□□□□□ -0.19
MMP28Q9H239 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 PMS2P7-201ENST00000506558 1336 ntBASIC13.84□□□□□ -0.19
MMP28Q9H239 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
MMP28Q9H239 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
MMP28Q9H239 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.84□□□□□ -0.19
MMP28Q9H239 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MMP28Q9H239 ZNF259P1-201ENST00000407656 1365 ntBASIC13.83□□□□□ -0.19
MMP28Q9H239 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.83□□□□□ -0.19
MMP28Q9H239 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
MMP28Q9H239 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
MMP28Q9H239 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.83□□□□□ -0.19
MMP28Q9H239 AC089987.1-201ENST00000551654 2209 ntBASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms