Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SPDYE17-201ENST00000412399 783 ntBASIC15.66■□□□□ 0.1
VPS39Q96JC1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 GPS2P2-201ENST00000430745 888 ntBASIC15.66■□□□□ 0.1
VPS39Q96JC1 HIST3H2BA-201ENST00000436555 524 ntBASIC15.66■□□□□ 0.1
VPS39Q96JC1 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 AP000344.2-201ENST00000512987 629 ntBASIC15.66■□□□□ 0.1
VPS39Q96JC1 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS39Q96JC1 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS39Q96JC1 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 LINC01101-201ENST00000622953 1884 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AL035456.1-201ENST00000456064 1369 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 LINC00528-201ENST00000600723 2160 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 RBPMS2P1-201ENST00000437762 623 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AC004835.2-201ENST00000603762 682 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 AC106881.1-201ENST00000605849 3329 ntBASIC15.65■□□□□ 0.1
VPS39Q96JC1 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
VPS39Q96JC1 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS39Q96JC1 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.64■□□□□ 0.1
VPS39Q96JC1 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
VPS39Q96JC1 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.64■□□□□ 0.1
VPS39Q96JC1 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS39Q96JC1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS39Q96JC1 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS39Q96JC1 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS39Q96JC1 CICP23-201ENST00000605013 2741 ntBASIC15.64■□□□□ 0.09
VPS39Q96JC1 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms