Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 AL391825.1-201ENST00000457671 1364 ntBASIC16.3■□□□□ 0.2
IRX4P78413 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
IRX4P78413 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.3■□□□□ 0.2
IRX4P78413 MIR658-201ENST00000385210 100 ntBASIC16.3■□□□□ 0.2
IRX4P78413 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.3■□□□□ 0.2
IRX4P78413 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 AC112492.5-201ENST00000421897 457 ntBASIC16.3■□□□□ 0.2
IRX4P78413 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.3■□□□□ 0.2
IRX4P78413 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.3■□□□□ 0.2
IRX4P78413 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 AC020765.3-201ENST00000613051 740 ntBASIC16.3■□□□□ 0.2
IRX4P78413 SPTSSB-204ENST00000617024 1292 ntBASIC16.3■□□□□ 0.2
IRX4P78413 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.3■□□□□ 0.2
IRX4P78413 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 FAM45BP-202ENST00000592932 1624 ntBASIC16.3■□□□□ 0.2
IRX4P78413 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
IRX4P78413 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
IRX4P78413 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
IRX4P78413 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
IRX4P78413 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.29■□□□□ 0.2
IRX4P78413 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 PPT1-215ENST00000641471 2368 ntBASIC16.29■□□□□ 0.2
IRX4P78413 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.29■□□□□ 0.2
IRX4P78413 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 SPDYE19P-201ENST00000338590 713 ntBASIC16.29■□□□□ 0.2
IRX4P78413 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 FAM220BP-201ENST00000377689 816 ntBASIC16.29■□□□□ 0.2
IRX4P78413 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.29■□□□□ 0.2
IRX4P78413 KRT17P8-201ENST00000540749 863 ntBASIC16.29■□□□□ 0.2
IRX4P78413 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.29■□□□□ 0.2
IRX4P78413 AC105021.1-202ENST00000570572 669 ntBASIC16.29■□□□□ 0.2
IRX4P78413 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.29■□□□□ 0.2
IRX4P78413 AC008494.3-201ENST00000606615 944 ntBASIC16.29■□□□□ 0.2
IRX4P78413 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
IRX4P78413 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.29■□□□□ 0.2
IRX4P78413 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
IRX4P78413 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
IRX4P78413 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
IRX4P78413 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms