Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.32■□□□□ 0.2
HDAC4P56524 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.32■□□□□ 0.2
HDAC4P56524 AC004790.1-201ENST00000612686 536 ntBASIC16.32■□□□□ 0.2
HDAC4P56524 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.32■□□□□ 0.2
HDAC4P56524 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.32■□□□□ 0.2
HDAC4P56524 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.32■□□□□ 0.2
HDAC4P56524 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 AC138035.3-201ENST00000622706 2791 ntBASIC16.32■□□□□ 0.2
HDAC4P56524 AC144831.1-201ENST00000573312 2656 ntBASIC16.32■□□□□ 0.2
HDAC4P56524 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC4P56524 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HDAC4P56524 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 AC084364.1-201ENST00000551967 1556 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HDAC4P56524 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
HDAC4P56524 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC4P56524 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC4P56524 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC4P56524 AL589987.1-201ENST00000453380 819 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 AL512638.1-201ENST00000457493 794 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC4P56524 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 AC135586.1-201ENST00000539323 574 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 AC015910.1-201ENST00000579400 975 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 AL109954.1-202ENST00000564051 2148 ntBASIC16.31■□□□□ 0.2
HDAC4P56524 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HDAC4P56524 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC4P56524 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC4P56524 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HDAC4P56524 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.3■□□□□ 0.2
HDAC4P56524 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 UGT1A2P-201ENST00000454886 866 ntBASIC16.3■□□□□ 0.2
HDAC4P56524 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.3■□□□□ 0.2
HDAC4P56524 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.3■□□□□ 0.2
HDAC4P56524 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HDAC4P56524 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC4P56524 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC4P56524 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
HDAC4P56524 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC4P56524 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms