Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
FOXA3P55318 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 NUS1P2-201ENST00000417358 873 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 AC132008.2-207ENST00000454517 770 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA3P55318 MIR4313-201ENST00000580760 101 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 MIR4515-201ENST00000584082 81 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA3P55318 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 DMBT1P1-203ENST00000636837 4628 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
FOXA3P55318 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 RCN1P1-201ENST00000400413 996 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 RAC2-202ENST00000401529 569 ntTSL 4 BASIC11.78□□□□□ -0.52
FOXA3P55318 RBM17P3-201ENST00000417687 1192 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 GPX1P2-201ENST00000429271 606 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 AP000867.3-201ENST00000524675 377 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
FOXA3P55318 IL11-204ENST00000590625 1028 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 AC099336.1-202ENST00000602961 463 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 AC005332.1-201ENST00000577698 1310 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 AL928921.2-201ENST00000641325 2442 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA3P55318 WASH3P-207ENST00000560956 1394 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA3P55318 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA3P55318 FO538757.1-201ENST00000623083 1397 ntBASIC11.78□□□□□ -0.52
FOXA3P55318 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms