Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 AC006486.2-201ENST00000624246 2199 ntBASIC15.18■□□□□ 0.02
HNF4AP41235 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HNF4AP41235 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.18■□□□□ 0.02
HNF4AP41235 TARDBPP1-201ENST00000442013 1203 ntBASIC15.18■□□□□ 0.02
HNF4AP41235 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.18■□□□□ 0.02
HNF4AP41235 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.18■□□□□ 0.02
HNF4AP41235 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.18■□□□□ 0.02
HNF4AP41235 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.18■□□□□ 0.02
HNF4AP41235 AL033527.5-202ENST00000641632 1098 ntBASIC15.18■□□□□ 0.02
HNF4AP41235 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.18■□□□□ 0.02
HNF4AP41235 AC112693.3-201ENST00000624819 1983 ntBASIC15.18■□□□□ 0.02
HNF4AP41235 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HNF4AP41235 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.18■□□□□ 0.02
HNF4AP41235 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HNF4AP41235 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 AC055876.3-201ENST00000431496 288 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.17■□□□□ 0.02
HNF4AP41235 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 CYMP-203ENST00000474680 1263 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
HNF4AP41235 AC093214.1-201ENST00000511688 1107 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.17■□□□□ 0.02
HNF4AP41235 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.17■□□□□ 0.02
HNF4AP41235 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.17■□□□□ 0.02
HNF4AP41235 AL158211.3-201ENST00000607385 239 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 AC138649.4-201ENST00000612222 287 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 C18orf15-201ENST00000623680 2534 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.17■□□□□ 0.02
HNF4AP41235 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms