Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHC1P29353 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHC1P29353 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHC1P29353 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHC1P29353 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SHC1P29353 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 MRPS18AP1-201ENST00000414458 589 ntBASIC14.34□□□□□ -0.11
SHC1P29353 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.34□□□□□ -0.11
SHC1P29353 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 BASP1P1-201ENST00000430708 665 ntBASIC14.34□□□□□ -0.11
SHC1P29353 PHKG1P2-201ENST00000457537 863 ntBASIC14.34□□□□□ -0.11
SHC1P29353 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 AC044860.1-202ENST00000559481 777 ntBASIC14.34□□□□□ -0.11
SHC1P29353 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.34□□□□□ -0.11
SHC1P29353 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
SHC1P29353 AL450472.2-201ENST00000603663 1156 ntBASIC14.34□□□□□ -0.11
SHC1P29353 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
SHC1P29353 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SHC1P29353 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.34□□□□□ -0.11
SHC1P29353 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHC1P29353 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHC1P29353 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHC1P29353 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SHC1P29353 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
SHC1P29353 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHC1P29353 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.33□□□□□ -0.12
SHC1P29353 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SHC1P29353 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.33□□□□□ -0.12
SHC1P29353 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.33□□□□□ -0.12
SHC1P29353 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SHC1P29353 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.33□□□□□ -0.12
SHC1P29353 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.33□□□□□ -0.12
SHC1P29353 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SHC1P29353 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHC1P29353 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.33□□□□□ -0.12
SHC1P29353 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.33□□□□□ -0.12
SHC1P29353 FO393414.2-201ENST00000405153 598 ntBASIC14.33□□□□□ -0.12
SHC1P29353 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.33□□□□□ -0.12
SHC1P29353 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.33□□□□□ -0.12
SHC1P29353 AC009477.1-201ENST00000452936 217 ntBASIC14.33□□□□□ -0.12
SHC1P29353 SERBP1P3-201ENST00000459980 809 ntBASIC14.33□□□□□ -0.12
SHC1P29353 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.33□□□□□ -0.12
SHC1P29353 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.33□□□□□ -0.12
SHC1P29353 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.33□□□□□ -0.12
SHC1P29353 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.33□□□□□ -0.12
SHC1P29353 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms