Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 KRT8P4-201ENST00000509735 1454 ntBASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AC091046.1-201ENST00000331871 207 ntBASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AC004066.1-201ENST00000502488 802 ntBASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AP001505.2-201ENST00000616815 443 ntBASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSB-PGBD3P0DP91 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
CSB-PGBD3P0DP91 AL158070.2-201ENST00000623713 1621 ntBASIC20.45■□□□□ 0.87
CSB-PGBD3P0DP91 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.87
CSB-PGBD3P0DP91 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 AC022188.1-201ENST00000620960 1664 ntBASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 SDHD-202ENST00000525291 790 ntTSL 3 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 AC007787.1-201ENST00000588095 1583 ntBASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 AC092364.2-201ENST00000596710 2692 ntBASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
CSB-PGBD3P0DP91 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 RN7SL720P-201ENST00000488178 304 ntBASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 AC005730.2-201ENST00000564549 1184 ntBASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 RN7SL713P-201ENST00000582127 302 ntBASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 MIR4706-201ENST00000582134 82 ntBASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSB-PGBD3P0DP91 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms