Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.38■□□□□ 0.21
APOEP02649 MEP1AP4-201ENST00000423244 1087 ntBASIC16.38■□□□□ 0.21
APOEP02649 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
APOEP02649 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
APOEP02649 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
APOEP02649 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 MIR4313-201ENST00000580760 101 ntBASIC16.38■□□□□ 0.21
APOEP02649 AC138761.1-201ENST00000584393 385 ntBASIC16.38■□□□□ 0.21
APOEP02649 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.38■□□□□ 0.21
APOEP02649 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.38■□□□□ 0.21
APOEP02649 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.38■□□□□ 0.21
APOEP02649 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
APOEP02649 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
APOEP02649 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
APOEP02649 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 PIN1P1-201ENST00000412108 996 ntBASIC16.37■□□□□ 0.21
APOEP02649 GNAQP1-201ENST00000444815 1067 ntBASIC16.37■□□□□ 0.21
APOEP02649 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 MEIS3P1-201ENST00000495167 958 ntBASIC16.37■□□□□ 0.21
APOEP02649 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.37■□□□□ 0.21
APOEP02649 AL132655.2-201ENST00000596276 594 ntBASIC16.37■□□□□ 0.21
APOEP02649 AF228730.6-201ENST00000641497 218 ntBASIC16.37■□□□□ 0.21
APOEP02649 AC084121.3-201ENST00000641716 218 ntBASIC16.37■□□□□ 0.21
APOEP02649 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.37■□□□□ 0.21
APOEP02649 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
APOEP02649 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
APOEP02649 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.37■□□□□ 0.21
APOEP02649 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 SSR4P1-203ENST00000599569 2260 ntBASIC16.36■□□□□ 0.21
APOEP02649 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
APOEP02649 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 AC020658.6-201ENST00000623564 1870 ntBASIC16.36■□□□□ 0.21
APOEP02649 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms