Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC092127.1-201ENST00000567093 3455 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
VPS13AQ96RL7 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC009955.4-201ENST00000597192 544 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.07■□□□□ 0
VPS13AQ96RL7 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.06■□□□□ 0
VPS13AQ96RL7 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.06■□□□□ 0
VPS13AQ96RL7 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.06■□□□□ 0
VPS13AQ96RL7 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 AL132780.4-201ENST00000624870 1135 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.06■□□□□ 0
VPS13AQ96RL7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.06■□□□□ 0
VPS13AQ96RL7 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
VPS13AQ96RL7 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 MIR4522-201ENST00000584932 87 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.06■□□□□ 0
VPS13AQ96RL7 MIR557-201ENST00000385239 98 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 AC114812.1-204ENST00000449669 728 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 AC018463.1-201ENST00000456674 917 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 RN7SL396P-201ENST00000471086 295 ntBASIC15.06■□□□□ 0
VPS13AQ96RL7 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.06■□□□□ 0
VPS13AQ96RL7 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.06■□□□□ 0
VPS13AQ96RL7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS13AQ96RL7 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
VPS13AQ96RL7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.05■□□□□ 0
VPS13AQ96RL7 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.05■□□□□ 0
VPS13AQ96RL7 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.05■□□□□ 0
VPS13AQ96RL7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
VPS13AQ96RL7 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.05■□□□□ 0
VPS13AQ96RL7 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.05■□□□□ 0
VPS13AQ96RL7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
VPS13AQ96RL7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.05■□□□□ -0
VPS13AQ96RL7 AC008723.1-201ENST00000506922 207 ntBASIC15.05■□□□□ -0
VPS13AQ96RL7 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
VPS13AQ96RL7 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC15.05■□□□□ -0
VPS13AQ96RL7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 MBLAC2-202ENST00000514906 1936 ntBASIC15.05■□□□□ -0
VPS13AQ96RL7 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.05■□□□□ -0
VPS13AQ96RL7 AC011270.2-201ENST00000624293 2550 ntBASIC15.05■□□□□ -0
VPS13AQ96RL7 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 AL357373.1-201ENST00000394974 322 ntBASIC15.05■□□□□ -0
VPS13AQ96RL7 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
VPS13AQ96RL7 BUD31-205ENST00000456893 512 ntTSL 5 BASIC15.05■□□□□ -0
VPS13AQ96RL7 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC15.05■□□□□ -0
VPS13AQ96RL7 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
VPS13AQ96RL7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
VPS13AQ96RL7 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VPS13AQ96RL7 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.05■□□□□ -0
VPS13AQ96RL7 AC011840.2-201ENST00000563063 1520 ntBASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms