Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 ARPC4-TTLL3-204ENST00000453882 499 ntTSL 48.18□□□□□ -1.16e-8■□□□□ 8.6
LIN28BQ6ZN17 ATP5B-208ENST00000551182 457 ntTSL 27.58□□□□□ -1.28e-11■□□□□ 8.6
LIN28BQ6ZN17 SUPV3L1-204ENST00000478227 597 ntTSL 57.28□□□□□ -1.244e-6■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.274e-6■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-205ENST00000528272 506 ntTSL 36.62□□□□□ -1.354e-6■□□□□ 8.6
LIN28BQ6ZN17 SUPV3L1-206ENST00000486661 518 ntTSL 56.17□□□□□ -1.424e-6■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.444e-6■□□□□ 8.6
LIN28BQ6ZN17 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.61□□□□□ -1.516e-8■□□□□ 8.6
LIN28BQ6ZN17 NUP54-206ENST00000508465 744 ntTSL 35.1□□□□□ -1.594e-6■□□□□ 8.6
LIN28BQ6ZN17 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5□□□□□ -1.616e-8■□□□□ 8.6
LIN28BQ6ZN17 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.636e-8■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-217ENST00000483421 2076 ntTSL 24.87□□□□□ -1.634e-6■□□□□ 8.6
LIN28BQ6ZN17 SMYD3-211ENST00000482592 514 ntTSL 34.78□□□□□ -1.644e-6■□□□□ 8.6
LIN28BQ6ZN17 ZC3H15-205ENST00000468120 601 ntTSL 44.77□□□□□ -1.654e-6■□□□□ 8.6
LIN28BQ6ZN17 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.77□□□□□ -1.654e-6■□□□□ 8.6
LIN28BQ6ZN17 ZC3H15-207ENST00000481101 558 ntTSL 44.4□□□□□ -1.714e-6■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-225ENST00000494241 703 ntTSL 34.39□□□□□ -1.714e-6■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.734e-6■□□□□ 8.6
LIN28BQ6ZN17 ZC3H15-208ENST00000496289 554 ntTSL 53.89□□□□□ -1.794e-6■□□□□ 8.6
LIN28BQ6ZN17 NUP54-212ENST00000513248 531 ntTSL 23.8□□□□□ -1.84e-6■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-210ENST00000506929 410 ntTSL 33.57□□□□□ -1.844e-6■□□□□ 8.6
LIN28BQ6ZN17 SUB1-202ENST00000502453 4273 ntTSL 1 (best)3.35□□□□□ -1.875e-8■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-203ENST00000502582 277 ntTSL 33.32□□□□□ -1.884e-6■□□□□ 8.6
LIN28BQ6ZN17 NUP54-208ENST00000508604 1671 ntTSL 23.2□□□□□ -1.94e-6■□□□□ 8.6
LIN28BQ6ZN17 SMYD3-215ENST00000490322 368 ntTSL 32.83□□□□□ -1.964e-6■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-219ENST00000487638 4233 ntTSL 1 (best)1.64□□□□□ -2.154e-6■□□□□ 8.6
LIN28BQ6ZN17 ZNF638-202ENST00000409407 4470 ntTSL 21.54□□□□□ -2.164e-6■□□□□ 8.6
LIN28BQ6ZN17 HM13-219ENST00000487964 902 ntTSL 518.35■□□□□ 0.531e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-213ENST00000469126 756 ntTSL 517.15■□□□□ 0.341e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-203ENST00000344042 847 ntTSL 515.71■□□□□ 0.111e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-205ENST00000460225 443 ntTSL 515.65■□□□□ 0.11e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-207ENST00000464173 587 ntTSL 213.95□□□□□ -0.181e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-217ENST00000483310 755 ntTSL 313.89□□□□□ -0.191e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-209ENST00000464661 906 ntTSL 313.15□□□□□ -0.31e-7■□□□□ 8.6
LIN28BQ6ZN17 HM13-214ENST00000472128 865 ntTSL 511.43□□□□□ -0.581e-7■□□□□ 8.6
LIN28BQ6ZN17 C2-216ENST00000494905 536 ntTSL 414.7□□□□□ -0.061e-7■□□□□ 8.6
LIN28BQ6ZN17 STT3B-207ENST00000488151 436 ntTSL 23.49□□□□□ -1.851e-7■□□□□ 8.6
LIN28BQ6ZN17 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.67■□□□□ 0.11e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-214ENST00000436656 822 ntTSL 310.77□□□□□ -0.691e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-224ENST00000454068 688 ntTSL 5 BASIC10.74□□□□□ -0.691e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-210ENST00000431268 1698 ntTSL 29.87□□□□□ -0.831e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-219ENST00000449289 542 ntTSL 3 BASIC8.99□□□□□ -0.971e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-228ENST00000456812 723 ntTSL 37.71□□□□□ -1.181e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.69□□□□□ -1.341e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-206ENST00000422183 745 ntTSL 26.5□□□□□ -1.371e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-201ENST00000412059 979 ntTSL 56.37□□□□□ -1.391e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.26□□□□□ -1.731e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-213ENST00000436285 772 ntTSL 23.73□□□□□ -1.811e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.78□□□□□ -1.961e-8■□□□□ 8.6
LIN28BQ6ZN17 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.11■■■□□ 2.413e-10■□□□□ 8.5
LIN28BQ6ZN17 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.04■■■□□ 2.243e-10■□□□□ 8.5
LIN28BQ6ZN17 PLXNB1-214ENST00000478171 576 ntTSL 318.79■□□□□ 0.63e-10■□□□□ 8.5
LIN28BQ6ZN17 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.68■□□□□ 0.583e-10■□□□□ 8.5
LIN28BQ6ZN17 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.23e-10■□□□□ 8.5
LIN28BQ6ZN17 PLXNB1-215ENST00000483676 367 ntTSL 27.22□□□□□ -1.253e-10■□□□□ 8.5
LIN28BQ6ZN17 RPL38-205ENST00000530646 2450 ntTSL 1 (best)16.83■□□□□ 0.288e-18■□□□□ 8.5
LIN28BQ6ZN17 RPL38-203ENST00000528433 169 ntTSL 514.47□□□□□ -0.098e-18■□□□□ 8.5
LIN28BQ6ZN17 RPL38-204ENST00000529123 576 ntTSL 212.37□□□□□ -0.438e-18■□□□□ 8.5
LIN28BQ6ZN17 RPL38-207ENST00000534490 429 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.548e-18■□□□□ 8.5
LIN28BQ6ZN17 GPT2-205ENST00000569193 3205 ntTSL 1 (best)12.81□□□□□ -0.368e-15■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-207ENST00000459747 594 ntTSL 417.27■□□□□ 0.363e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-209ENST00000460591 898 ntTSL 310.17□□□□□ -0.783e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-212ENST00000464596 989 ntTSL 59.86□□□□□ -0.833e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-221ENST00000495875 545 ntTSL 28.83□□□□□ -13e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.67□□□□□ -1.183e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.62□□□□□ -1.193e-7■□□□□ 8.5
LIN28BQ6ZN17 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.62□□□□□ -1.193e-7■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-211ENST00000513303 714 ntTSL 214.4□□□□□ -0.11e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-201ENST00000505309 573 ntTSL 212.97□□□□□ -0.331e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-208ENST00000510965 787 ntTSL 512.79□□□□□ -0.361e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-206ENST00000509276 738 ntTSL 511.06□□□□□ -0.641e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.681e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC9.57□□□□□ -0.881e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-212ENST00000514218 1047 ntTSL 58.6□□□□□ -1.031e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.11e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.171e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-210ENST00000512980 4175 ntTSL 26.61□□□□□ -1.351e-25■□□□□ 8.5
LIN28BQ6ZN17 SELENOP-213ENST00000514403 653 ntTSL 24.7□□□□□ -1.661e-25■□□□□ 8.5
LIN28BQ6ZN17 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC12.2□□□□□ -0.462e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-216ENST00000443799 897 ntTSL 510.77□□□□□ -0.692e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-203ENST00000416952 799 ntTSL 210.31□□□□□ -0.762e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-220ENST00000449589 712 ntTSL 38.99□□□□□ -0.972e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-226ENST00000455838 632 ntTSL 28.99□□□□□ -0.972e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-211ENST00000432536 959 ntTSL 2 BASIC8.39□□□□□ -1.072e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-227ENST00000456293 583 ntTSL 38.03□□□□□ -1.122e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-204ENST00000421068 1060 ntTSL 25.47□□□□□ -1.532e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.14□□□□□ -1.592e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-205ENST00000422008 497 ntTSL 35.07□□□□□ -1.62e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-215ENST00000442067 1114 ntTSL 24.65□□□□□ -1.672e-13■□□□□ 8.5
LIN28BQ6ZN17 GAS5-229ENST00000458220 469 ntTSL 23.33□□□□□ -1.882e-13■□□□□ 8.5
LIN28BQ6ZN17 CANX-214ENST00000508787 568 ntTSL 33.22□□□□□ -1.897e-18■□□□□ 8.5
LIN28BQ6ZN17 PLXNB2-210ENST00000479818 1916 ntTSL 1 (best)18.39■□□□□ 0.534e-7■□□□□ 8.5
LIN28BQ6ZN17 PLXNB2-209ENST00000479701 3504 ntTSL 213.31□□□□□ -0.284e-7■□□□□ 8.5
LIN28BQ6ZN17 PLXNB2-208ENST00000463165 3038 ntTSL 212.21□□□□□ -0.464e-7■□□□□ 8.5
LIN28BQ6ZN17 PLXNB2-213ENST00000610984 3443 ntTSL 5 BASIC10.68□□□□□ -0.74e-7■□□□□ 8.5
LIN28BQ6ZN17 TRIM28-204ENST00000594806 861 ntTSL 528.58■■■□□ 2.175e-12■□□□□ 8.5
LIN28BQ6ZN17 FOXK2-205ENST00000529652 2199 ntTSL 216.44■□□□□ 0.229e-8■□□□□ 8.5
LIN28BQ6ZN17 CNOT1-206ENST00000564557 582 ntTSL 315.32■□□□□ 0.049e-8■□□□□ 8.5
LIN28BQ6ZN17 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC10.77□□□□□ -0.692e-8■□□□□ 8.5
LIN28BQ6ZN17 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC7.1□□□□□ -1.272e-8■□□□□ 8.5
Retrieved 100 of 21,972 protein–RNA pairs in 490.9 ms