RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
NUP54-212ENST00000513248 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
NUP54-212ENST00000513248 SENP3Q9H4L4 574 aaPredicted RBP20.34■□□□□ 0.85
NUP54-212ENST00000513248 PHF23Q9BUL5 403 aaPredicted RBP20.01■□□□□ 0.79
NUP54-212ENST00000513248 FOXD1Q16676 465 aa18.9■□□□□ 0.62
NUP54-212ENST00000513248 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
NUP54-212ENST00000513248 MSH5O43196 834 aa17.79■□□□□ 0.44
NUP54-212ENST00000513248 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
NUP54-212ENST00000513248 PPP6R1Q9UPN7 881 aa17.59■□□□□ 0.41
NUP54-212ENST00000513248 ADRA2BP18089 450 aa17.51■□□□□ 0.39
NUP54-212ENST00000513248 POTEDQ86YR6 584 aa17.4■□□□□ 0.38
NUP54-212ENST00000513248 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
NUP54-212ENST00000513248 DMRT2Q9Y5R5 561 aa16.11■□□□□ 0.17
NUP54-212ENST00000513248 MAPK8IP2Q13387 824 aaPredicted RBP16.08■□□□□ 0.16
NUP54-212ENST00000513248 PPP4R3CPQ6ZMV5 832 aa15.71■□□□□ 0.11
NUP54-212ENST00000513248 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
NUP54-212ENST00000513248 CNKSR2Q8WXI2 1034 aa15.48■□□□□ 0.07
NUP54-212ENST00000513248 RNF216Q9NWF9 866 aaPredicted RBP15.37■□□□□ 0.05
NUP54-212ENST00000513248 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
NUP54-212ENST00000513248 CACNB1Q02641 598 aaPredicted RBP15.22■□□□□ 0.03
NUP54-212ENST00000513248 NCBP3Q53F19 620 aaKnown RBP15.15■□□□□ 0.02
NUP54-212ENST00000513248 RNF39Q9H2S5 420 aa15.14■□□□□ 0.01
NUP54-212ENST00000513248 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
NUP54-212ENST00000513248 C1QBPQ07021 282 aaKnown RBP14.96□□□□□ -0.01
NUP54-212ENST00000513248 NPM3O75607 178 aaKnown RBP14.87□□□□□ -0.03
NUP54-212ENST00000513248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.05
NUP54-212ENST00000513248 KCNA4P22459 653 aa14.5□□□□□ -0.09
NUP54-212ENST00000513248 U3KPZ7 1027 aaPredicted RBP14.4□□□□□ -0.1
NUP54-212ENST00000513248 SLC4A2P04920 1241 aa14.22□□□□□ -0.13
NUP54-212ENST00000513248 CAPN15O75808 1086 aa14.17□□□□□ -0.14
NUP54-212ENST00000513248 SPINK5Q9NQ38 1064 aaPredicted RBP14.17□□□□□ -0.14
NUP54-212ENST00000513248 DSG3P32926 999 aa14.14□□□□□ -0.15
NUP54-212ENST00000513248 APLP2Q06481 763 aa14.09□□□□□ -0.15
NUP54-212ENST00000513248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.06□□□□□ -0.16
NUP54-212ENST00000513248 HNRNPUL2Q1KMD3 747 aaKnown RBP14.06□□□□□ -0.16
NUP54-212ENST00000513248 ZNF219Q9P2Y4 722 aaPredicted RBP13.97□□□□□ -0.17
NUP54-212ENST00000513248 SAMD1Q6SPF0 538 aaPredicted RBP13.95□□□□□ -0.18
NUP54-212ENST00000513248 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
NUP54-212ENST00000513248 MYCNP04198 464 aaPredicted RBP13.8□□□□□ -0.2
NUP54-212ENST00000513248 ABCB7O75027 752 aa13.79□□□□□ -0.2
NUP54-212ENST00000513248 SLC4A1APQ9BWU0 796 aaKnown RBP13.7□□□□□ -0.22
NUP54-212ENST00000513248 POTEHQ6S545 545 aa13.63□□□□□ -0.23
NUP54-212ENST00000513248 FOXD4L1Q9NU39 408 aa13.6□□□□□ -0.23
NUP54-212ENST00000513248 POLA2Q14181 598 aa13.55□□□□□ -0.24
NUP54-212ENST00000513248 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
NUP54-212ENST00000513248 ATF5Q9Y2D1 282 aaPredicted RBP13.39□□□□□ -0.27
NUP54-212ENST00000513248 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
NUP54-212ENST00000513248 ZBTB22O15209 634 aa13.32□□□□□ -0.28
NUP54-212ENST00000513248 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
NUP54-212ENST00000513248 CHRDL2Q6WN34 429 aa13.23□□□□□ -0.29
NUP54-212ENST00000513248 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
NUP54-212ENST00000513248 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
NUP54-212ENST00000513248 REM2Q8IYK8 340 aaPredicted RBP13.04□□□□□ -0.32
NUP54-212ENST00000513248 FBLN2P98095 1184 aa12.96□□□□□ -0.33
NUP54-212ENST00000513248 SPDYE2BA6NHP3 402 aa12.92□□□□□ -0.34
NUP54-212ENST00000513248 SPDYE6P0CI01 402 aa12.92□□□□□ -0.34
NUP54-212ENST00000513248 SPDYE2Q495Y8 402 aa12.92□□□□□ -0.34
NUP54-212ENST00000513248 PITPNM1O00562 1244 aa12.9□□□□□ -0.34
NUP54-212ENST00000513248 PIP4P2Q8N4L2 257 aa12.89□□□□□ -0.35
NUP54-212ENST00000513248 FXR2P51116 673 aaKnown RBP eCLIP12.83□□□□□ -0.36
NUP54-212ENST00000513248 MKRN4PQ13434 485 aaPredicted RBP12.81□□□□□ -0.36
NUP54-212ENST00000513248 SP7Q8TDD2 431 aaPredicted RBP12.76□□□□□ -0.37
NUP54-212ENST00000513248 SSUH2Q9Y2M2 353 aa12.73□□□□□ -0.37
NUP54-212ENST00000513248 EHMT2Q96KQ7 1210 aa12.71□□□□□ -0.37
NUP54-212ENST00000513248 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
NUP54-212ENST00000513248 ZNF692Q9BU19 519 aaPredicted RBP12.7□□□□□ -0.38
NUP54-212ENST00000513248 CSRNP3Q8WYN3 585 aa12.66□□□□□ -0.38
NUP54-212ENST00000513248 HAX1O00165 279 aa12.65□□□□□ -0.38
NUP54-212ENST00000513248 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
NUP54-212ENST00000513248 PRKAR2AP13861 404 aaKnown RBP12.55□□□□□ -0.4
NUP54-212ENST00000513248 PABPN1Q86U42 306 aaKnown RBP eCLIP12.5□□□□□ -0.41
NUP54-212ENST00000513248 EVX2Q03828 476 aa12.45□□□□□ -0.42
NUP54-212ENST00000513248 C19orf67A6NJJ6 358 aa12.42□□□□□ -0.42
NUP54-212ENST00000513248 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
NUP54-212ENST00000513248 CHADLQ6NUI6 762 aa12.34□□□□□ -0.43
NUP54-212ENST00000513248 FARP1Q9Y4F1 1045 aaPredicted RBP12.23□□□□□ -0.45
NUP54-212ENST00000513248 GABBR2O75899 941 aa12.22□□□□□ -0.45
NUP54-212ENST00000513248 STAG3Q9UJ98 1225 aa12.22□□□□□ -0.45
NUP54-212ENST00000513248 SPDYE4A6NLX3 237 aa12.19□□□□□ -0.46
NUP54-212ENST00000513248 CD44P16070 742 aaKnown RBP12.16□□□□□ -0.46
NUP54-212ENST00000513248 CLCN6P51797 869 aa12.14□□□□□ -0.47
NUP54-212ENST00000513248 CREBZFQ9NS37 354 aa12.1□□□□□ -0.47
NUP54-212ENST00000513248 ZNF579Q8NAF0 562 aaKnown RBP12.01□□□□□ -0.49
NUP54-212ENST00000513248 PROM2Q8N271 834 aa11.96□□□□□ -0.49
NUP54-212ENST00000513248 ZRANB1Q9UGI0 708 aa11.96□□□□□ -0.49
NUP54-212ENST00000513248 LHX8Q68G74 356 aa11.95□□□□□ -0.5
NUP54-212ENST00000513248 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
NUP54-212ENST00000513248 NPM1P06748 294 aaKnown RBP eCLIP11.91□□□□□ -0.5
NUP54-212ENST00000513248 MNX1P50219 401 aaPredicted RBP11.91□□□□□ -0.5
NUP54-212ENST00000513248 PAK3O75914 559 aaPredicted RBP11.9□□□□□ -0.5
NUP54-212ENST00000513248 DCBLD2Q96PD2 775 aa11.88□□□□□ -0.51
NUP54-212ENST00000513248 GALR2O43603 387 aaPredicted RBP11.81□□□□□ -0.52
NUP54-212ENST00000513248 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
NUP54-212ENST00000513248 PLEKHG5O94827 1062 aa11.67□□□□□ -0.54
NUP54-212ENST00000513248 MS4A3Q96HJ5 214 aa11.63□□□□□ -0.55
NUP54-212ENST00000513248 CCDC61Q9Y6R9 512 aa11.63□□□□□ -0.55
NUP54-212ENST00000513248 ASTLQ6HA08 431 aaPredicted RBP11.62□□□□□ -0.55
NUP54-212ENST00000513248 MIER1Q8N108 512 aa11.62□□□□□ -0.55
NUP54-212ENST00000513248 TSPYL2Q9H2G4 693 aaPredicted RBP11.61□□□□□ -0.55
NUP54-212ENST00000513248 PELP1Q8IZL8 1130 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms