Protein–RNA interactions for Protein: Q5T6M2

LINC00242, Putative uncharacterized protein encoded by LINC00242, humanhuman

Predictions only

Length 205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00242Q5T6M2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 AC004877.2-201ENST00000623941 599 ntBASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 BCAR1-209ENST00000546196 1340 ntBASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 FOXO1B-201ENST00000504678 1527 ntBASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 CYP4F24P-201ENST00000586049 1580 ntBASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 R3HDM2P2-201ENST00000401880 2116 ntBASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 USP35-204ENST00000530267 2419 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00242Q5T6M2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC117489.1-201ENST00000625169 3217 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 RDX-218ENST00000544551 4117 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 ACE3P-201ENST00000423435 1973 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 EEF1DP4-201ENST00000446006 880 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 ST20-AS1-201ENST00000560255 4223 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AL049840.3-201ENST00000602669 611 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 MIR7706-201ENST00000613747 67 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 AC104581.4-201ENST00000623126 3052 ntBASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
LINC00242Q5T6M2 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00242Q5T6M2 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC10.71□□□□□ -0.7
LINC00242Q5T6M2 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00242Q5T6M2 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00242Q5T6M2 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 PCDHGB8P-201ENST00000502926 1973 ntBASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00242Q5T6M2 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms