Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AP3S2-216ENST00000617003 1561 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 MIR346-201ENST00000362234 95 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 HLA-H-201ENST00000383620 1096 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RAC2-202ENST00000401529 569 ntTSL 4 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL139010.1-201ENST00000454878 894 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 PHKG1P2-201ENST00000457537 863 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 GATB-205ENST00000508611 605 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC027796.2-201ENST00000575326 344 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL513210.1-201ENST00000629608 234 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 AC105339.1-204ENST00000636249 355 ntBASIC11.97□□□□□ -0.49
HLA-DMBP28068 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DMBP28068 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 LINC00528-201ENST00000600723 2160 ntBASIC11.96□□□□□ -0.49
HLA-DMBP28068 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 COCH-203ENST00000460581 2688 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 POLL-217ENST00000628479 1953 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PARN-202ENST00000420015 2360 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 STOM-202ENST00000347359 870 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AC004461.1-201ENST00000412461 403 ntBASIC11.96□□□□□ -0.49
HLA-DMBP28068 PON3-203ENST00000427422 894 ntTSL 3 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 ELP6-209ENST00000446787 894 ntTSL 3 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms