Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC188H7C350 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 AC004870.1-201ENST00000315132 882 ntBASIC16.26■□□□□ 0.19
CCDC188H7C350 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 MIR1224-201ENST00000408193 85 ntBASIC16.26■□□□□ 0.19
CCDC188H7C350 AZGP1P1-201ENST00000411909 902 ntBASIC16.26■□□□□ 0.19
CCDC188H7C350 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC188H7C350 KRT18P2-201ENST00000447938 1258 ntBASIC16.26■□□□□ 0.19
CCDC188H7C350 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC188H7C350 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC188H7C350 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC188H7C350 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC188H7C350 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC188H7C350 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC188H7C350 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CCDC188H7C350 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC188H7C350 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
CCDC188H7C350 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 BX640514.1-201ENST00000583223 1918 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 MIR346-201ENST00000362234 95 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC188H7C350 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC188H7C350 TFAMP1-201ENST00000412727 736 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 KRT18P56-201ENST00000507275 550 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 AC145285.3-201ENST00000564603 959 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 AC104692.2-201ENST00000603054 253 ntBASIC16.25■□□□□ 0.19
CCDC188H7C350 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC188H7C350 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CCDC188H7C350 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC188H7C350 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC188H7C350 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CCDC188H7C350 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC188H7C350 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms