Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 KRT18P32-201ENST00000424695 1287 ntBASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 AL139010.1-201ENST00000454878 894 ntBASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 ALG1L8P-201ENST00000533887 760 ntBASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 AC092865.5-201ENST00000545435 363 ntBASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 REXO1L1P-202ENST00000608646 1974 ntBASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RHBDD3Q9Y3P4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 AP000344.2-201ENST00000512987 629 ntBASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 AC004835.2-201ENST00000603762 682 ntBASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RHBDD3Q9Y3P4 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
RHBDD3Q9Y3P4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms