Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CLRN1P58418 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN1P58418 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN1P58418 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 AC013268.4-201ENST00000637413 2228 ntBASIC14.01□□□□□ -0.17
CLRN1P58418 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 RPL37AP1-201ENST00000412502 279 ntBASIC14.01□□□□□ -0.17
CLRN1P58418 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.01□□□□□ -0.17
CLRN1P58418 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.01□□□□□ -0.17
CLRN1P58418 AL033527.5-202ENST00000641632 1098 ntBASIC14.01□□□□□ -0.17
CLRN1P58418 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLRN1P58418 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLRN1P58418 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN1P58418 AC009090.5-201ENST00000624886 2285 ntBASIC14.01□□□□□ -0.17
CLRN1P58418 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14□□□□□ -0.17
CLRN1P58418 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14□□□□□ -0.17
CLRN1P58418 NME2-201ENST00000393183 568 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14□□□□□ -0.17
CLRN1P58418 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 METTL21AP1-201ENST00000438852 635 ntBASIC14□□□□□ -0.17
CLRN1P58418 TARDBPP1-201ENST00000442013 1203 ntBASIC14□□□□□ -0.17
CLRN1P58418 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14□□□□□ -0.17
CLRN1P58418 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 RN7SL618P-201ENST00000477850 296 ntBASIC14□□□□□ -0.17
CLRN1P58418 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14□□□□□ -0.17
CLRN1P58418 AC027369.6-201ENST00000525520 931 ntBASIC14□□□□□ -0.17
CLRN1P58418 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14□□□□□ -0.17
CLRN1P58418 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN1P58418 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14□□□□□ -0.17
CLRN1P58418 AC140878.1-201ENST00000565277 250 ntBASIC14□□□□□ -0.17
CLRN1P58418 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14□□□□□ -0.17
CLRN1P58418 AL138828.2-201ENST00000615812 383 ntBASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms