Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.99■□□□□ 0.47
CTCFP49711 AC116353.5-201ENST00000638148 1699 ntBASIC17.99■□□□□ 0.47
CTCFP49711 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CTCFP49711 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CTCFP49711 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.98■□□□□ 0.47
CTCFP49711 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 AC021723.1-201ENST00000486306 515 ntBASIC17.98■□□□□ 0.47
CTCFP49711 AP002803.1-201ENST00000528836 498 ntBASIC17.98■□□□□ 0.47
CTCFP49711 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC17.98■□□□□ 0.47
CTCFP49711 AL031713.1-201ENST00000564813 661 ntBASIC17.98■□□□□ 0.47
CTCFP49711 RN7SL48P-201ENST00000579283 293 ntBASIC17.98■□□□□ 0.47
CTCFP49711 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC17.98■□□□□ 0.47
CTCFP49711 AC103810.10-201ENST00000606504 343 ntBASIC17.98■□□□□ 0.47
CTCFP49711 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.98■□□□□ 0.47
CTCFP49711 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 AL157791.1-201ENST00000553667 1699 ntBASIC17.98■□□□□ 0.47
CTCFP49711 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.98■□□□□ 0.47
CTCFP49711 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
CTCFP49711 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CTCFP49711 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CTCFP49711 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CTCFP49711 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CTCFP49711 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 AC106886.4-201ENST00000623557 2502 ntBASIC17.97■□□□□ 0.47
CTCFP49711 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 KRT8P29-201ENST00000420409 1371 ntBASIC17.97■□□□□ 0.47
CTCFP49711 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.97■□□□□ 0.47
CTCFP49711 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 AC012362.1-201ENST00000434906 739 ntBASIC17.97■□□□□ 0.47
CTCFP49711 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC17.97■□□□□ 0.47
CTCFP49711 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 AC242376.1-201ENST00000559033 726 ntBASIC17.97■□□□□ 0.47
CTCFP49711 C2orf69P1-201ENST00000563532 1093 ntBASIC17.97■□□□□ 0.47
CTCFP49711 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC17.97■□□□□ 0.47
CTCFP49711 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 EIF5AP2-201ENST00000585668 1047 ntBASIC17.97■□□□□ 0.47
CTCFP49711 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.97■□□□□ 0.47
CTCFP49711 YRDCP1-201ENST00000621419 643 ntBASIC17.97■□□□□ 0.47
CTCFP49711 AC022748.3-201ENST00000621828 275 ntBASIC17.97■□□□□ 0.47
CTCFP49711 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.97■□□□□ 0.47
CTCFP49711 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CTCFP49711 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.97■□□□□ 0.47
CTCFP49711 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms